Jatropha Genome Database

JcCB0206951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0206951.10 - phase: 0 
         (212 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015153001 assembled CDS                                       323   5e-89
GSVIVT01026851001 assembled CDS                                       233   6e-62
GSVIVT01028985001 assembled CDS                                       228   1e-60

>GSVIVT01015153001 assembled CDS
          Length = 291

 Score =  323 bits (827), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 158/195 (81%), Positives = 174/195 (89%), Gaps = 2/195 (1%)

Query: 20  VLDIYPLSSYYFGAKDPLSFKNETLADRVQRMKSNYLAHGLRTYVEAVILVELFKHPHLL 79
           VLDIYPLS YYFG+KDPL  K ETLADR+ RMKSNY  +G RT V AVILVELFKHPHLL
Sbjct: 97  VLDIYPLSCYYFGSKDPLLLKEETLADRILRMKSNYSRYGSRTCVVAVILVELFKHPHLL 156

Query: 80  LLQIRNSIFRLPGGRLRPGESDIDGLKRKLSRKLSGNEDE--TDWEVDECLGMWWKPDFE 137
           LLQ++NS F+LPGGRLRPGES+I+GLKRKLSRKLS NED   +DWEV ECLGMWW+PDFE
Sbjct: 157 LLQVKNSFFKLPGGRLRPGESEINGLKRKLSRKLSVNEDGDGSDWEVGECLGMWWRPDFE 216

Query: 138 TLPYPYMPPNVKTPKECTKLFLVRLPMSRKFIVPKNLKLLAIPLCQIHENHKTYGSIISG 197
           TL YPY+PPNVK PKECTKLFLV+LP SRKFIVPKNLKLLAIPLCQ+HEN KTYG II+G
Sbjct: 217 TLLYPYLPPNVKNPKECTKLFLVKLPPSRKFIVPKNLKLLAIPLCQLHENDKTYGPIIAG 276

Query: 198 IPQLLSKFSFNIINS 212
           +PQLLSKFSFNII+S
Sbjct: 277 VPQLLSKFSFNIIDS 291


>GSVIVT01026851001 assembled CDS
          Length = 200

 Score =  233 bits (593), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 106/194 (54%), Positives = 147/194 (75%), Gaps = 2/194 (1%)

Query: 20  VLDIYPLSSYYFGAKDPLSFKNETLADRVQRMKSNYLAHGLRTYVEAVILVELFKHPHLL 79
           V++ YPLSSY FG K+P   K+ ++ADR+ RMK NY+  G+RT VEA++LV+   HPH+L
Sbjct: 6   VVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHIL 65

Query: 80  LLQIRNSIFRLPGGRLRPGESDIDGLKRKLSRKLSGNE--DETDWEVDECLGMWWKPDFE 137
           LLQI N+  +LPGGRL+PGE++I+GLKRKLS KL+ N    + DW++ EC+ +WW+P+FE
Sbjct: 66  LLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAANSLALQPDWQIGECVAIWWRPNFE 125

Query: 138 TLPYPYMPPNVKTPKECTKLFLVRLPMSRKFIVPKNLKLLAIPLCQIHENHKTYGSIISG 197
           T+ YPY PP++  PKEC KLF+V L     F VPKNLKLLA+PL ++++N + YG +IS 
Sbjct: 126 TIMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVIST 185

Query: 198 IPQLLSKFSFNIIN 211
           IPQ LS+F FN++ 
Sbjct: 186 IPQQLSRFQFNMMT 199


>GSVIVT01028985001 assembled CDS
          Length = 200

 Score =  228 bits (582), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 104/195 (53%), Positives = 147/195 (75%), Gaps = 2/195 (1%)

Query: 20  VLDIYPLSSYYFGAKDPLSFKNETLADRVQRMKSNYLAHGLRTYVEAVILVELFKHPHLL 79
           V++ YPLSSY FG K+P   K+ ++ADR+ RM+ NY+  G+RT V+A++LV+   HPH+L
Sbjct: 6   VVNTYPLSSYTFGTKEPKMEKDTSVADRLARMRVNYMKEGMRTTVDAILLVQEHTHPHIL 65

Query: 80  LLQIRNSIFRLPGGRLRPGESDIDGLKRKLSRKLSGNED--ETDWEVDECLGMWWKPDFE 137
           LLQI N+  +LPGGRL+PGE++I+GLKRKLS KL+ N    + DW++ EC+ +WW+P+FE
Sbjct: 66  LLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKLAANSPGLQPDWQIGECVAIWWRPNFE 125

Query: 138 TLPYPYMPPNVKTPKECTKLFLVRLPMSRKFIVPKNLKLLAIPLCQIHENHKTYGSIISG 197
           T+ YPY PP++  PKEC KLF+V L     F VPKNLKLLA+PL ++++N + YG +IS 
Sbjct: 126 TVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVIST 185

Query: 198 IPQLLSKFSFNIINS 212
           IP  LS+F FN+I +
Sbjct: 186 IPLHLSRFQFNMIAA 200