Jatropha Genome Database

JcCB0205901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0205901.10 + phase: 0 /partial
         (640 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016597001 assembled CDS                                       558   e-159

>GSVIVT01016597001 assembled CDS
          Length = 899

 Score =  558 bits (1438), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 263/300 (87%), Positives = 281/300 (93%)

Query: 341 LGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSQDADRTKNMGILIHGD 400
           L T +    RGG+RIHLSLVANPSHLEAVDPVVVGKTRAKQYYS D DRTKN+G+LIHGD
Sbjct: 256 LATKWTAAKRGGRRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSNDLDRTKNIGVLIHGD 315

Query: 401 GSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPRAGRSSQYCTDVAKALNAP 460
           GSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPR+GRSSQYCTDVAKALNAP
Sbjct: 316 GSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPRSGRSSQYCTDVAKALNAP 375

Query: 461 IFHVNGDDVEAVVHACELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVIR 520
           IFHVNGDD+EAVVH CELAAEWRQTFHSDVVVD+VCYRRFGHNEIDEPSFTQPKMY+VIR
Sbjct: 376 IFHVNGDDMEAVVHVCELAAEWRQTFHSDVVVDVVCYRRFGHNEIDEPSFTQPKMYKVIR 435

Query: 521 NHPSALEIYQRKLLESGQVGDEDIKKIQKKVITILNEEFLASKDYVPKRRDWLSSHWAGF 580
           NHPSALEIYQ+KLLE GQ   EDI ++Q KV TILNEEFLASKDYVP RRDWLS++WAGF
Sbjct: 436 NHPSALEIYQKKLLELGQATQEDIDRVQNKVNTILNEEFLASKDYVPNRRDWLSAYWAGF 495

Query: 581 KSPEQLSRVRNTGVKPEILKNVGKAITTLPENFKPHRAVKKVYEHRAQMIETGEGIDWAV 640
           KSPEQ+SRVRNTGV+PEILKNVGKAITTLPENFK HRAVKK+++ RAQMIETGEGIDWAV
Sbjct: 496 KSPEQISRVRNTGVRPEILKNVGKAITTLPENFKAHRAVKKIFDLRAQMIETGEGIDWAV 555



 Score =  509 bits (1310), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 240/267 (89%), Positives = 252/267 (94%), Gaps = 3/267 (1%)

Query: 1   MAWFRAGT---NVARLAIKRTLCQSGSYTTRVRFIPSQSRYFHTTVFKSKAQTAPVPRPV 57
           M WFR G+   +VA+ AI+RTLCQ GSY TR R +PSQ+RYFH+TV KSKAQ APVPRPV
Sbjct: 1   MVWFRVGSGVGSVAKHAIRRTLCQGGSYATRTRVLPSQNRYFHSTVLKSKAQAAPVPRPV 60

Query: 58  PLSRLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQAATSPGISGQTIQE 117
           PLSRLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQAATSPGISGQTIQE
Sbjct: 61  PLSRLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQAATSPGISGQTIQE 120

Query: 118 SMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPEDLDPALYGFTEADLDREFFLGVWRMSG 177
           SMRLLLLVRAYQVNGHMKAKLDPLGLEEREIP+DLDPALYGFTEADLDREFFLGVWRM+G
Sbjct: 121 SMRLLLLVRAYQVNGHMKAKLDPLGLEEREIPDDLDPALYGFTEADLDREFFLGVWRMAG 180

Query: 178 FLSENRPVQTLRSILTRLEQAYCGSIGFEYMHIADRDKCNWLRDKIETPTPMQYNRQRRE 237
           FLSENRPVQTLR+ILTRLEQAYCGSIG+EYMHIADRDKCNWLRDKIETPTP QYN+QRRE
Sbjct: 181 FLSENRPVQTLRAILTRLEQAYCGSIGYEYMHIADRDKCNWLRDKIETPTPRQYNQQRRE 240

Query: 238 VILDRLIWSTQFENFLATKWTTAKRFG 264
           VILDRLIWSTQFENFLATKWT AKR G
Sbjct: 241 VILDRLIWSTQFENFLATKWTAAKRGG 267