Jatropha Genome Database

JcCB0205061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0205061.10 + phase: 0 
         (95 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000083001 assembled CDS                                        87   1e-18
GSVIVT01000084001 assembled CDS                                        79   4e-16
GSVIVT01017943001 assembled CDS                                        64   1e-11

>GSVIVT01000083001 assembled CDS
          Length = 738

 Score = 87.4 bits (215), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/70 (62%), Positives = 54/70 (77%), Gaps = 11/70 (15%)

Query: 1  MLQNIVGAITGDSNGSKKIKCVSGECKKITGSVVLMKKNVLDFNDFHASLLDRVHELFGH 60
          M+ +IVGAITG+++            KKI G+VVLMKKNVLDFNDF+AS+LDRVHEL G 
Sbjct: 1  MIHSIVGAITGENDK-----------KKIKGTVVLMKKNVLDFNDFNASVLDRVHELLGQ 49

Query: 61 GVSLQLISSV 70
          GVSLQL+S+V
Sbjct: 50 GVSLQLVSAV 59


>GSVIVT01000084001 assembled CDS
          Length = 900

 Score = 79.0 bits (193), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/67 (59%), Positives = 50/67 (74%), Gaps = 11/67 (16%)

Query: 4   NIVGAITGDSNGSKKIKCVSGECKKITGSVVLMKKNVLDFNDFHASLLDRVHELFGHGVS 63
           +IV AITG+++            KKI G++VLMKKNVLDFNDF+A + DRVHELFG GVS
Sbjct: 45  SIVSAITGENDK-----------KKIEGTIVLMKKNVLDFNDFNAPVRDRVHELFGQGVS 93

Query: 64  LQLISSV 70
           LQL+S+V
Sbjct: 94  LQLVSAV 100


>GSVIVT01017943001 assembled CDS
          Length = 751

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 42/60 (70%)

Query: 14 NGSKKIKCVSGECKKITGSVVLMKKNVLDFNDFHASLLDRVHELFGHGVSLQLISSVTSE 73
          + SKK K    E +KI G VVLMKKNV+D ND  ASL+D V+EL G  VSLQLIS+  ++
Sbjct: 18 SNSKKSKDREDESQKIEGRVVLMKKNVMDLNDSKASLIDSVYELVGKHVSLQLISATHAD 77