Jatropha Genome Database

JcCB0204821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0204821.10 - phase: 2 /pseudo/partial
         (244 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037715001 assembled CDS                                       362   e-101
GSVIVT01007243001 assembled CDS                                       345   1e-95

>GSVIVT01037715001 assembled CDS
          Length = 545

 Score =  362 bits (929), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/191 (90%), Positives = 182/191 (95%), Gaps = 1/191 (0%)

Query: 51  TSSDFDAKPMVMLLGQYSTGKTTFIKHLLKTSYPGAHIGPEPTTDRFVVVMSGTDERSIP 110
           T+SDFDAKPMVMLLGQYSTGKTTFIKHLLK+SYPGAHIGPEPTTDRFVVVMSG DERSIP
Sbjct: 190 TNSDFDAKPMVMLLGQYSTGKTTFIKHLLKSSYPGAHIGPEPTTDRFVVVMSGPDERSIP 249

Query: 111 GNTVAVQADMPFNGLTTFGTAFLSKFECSQMPHPLLEHITFVDTPGVLSGEKQRTQRAYD 170
           GNT+AVQADMP++GLTTFGTAFLSKFECSQMPH LLEHITFVDTPGVLSGEKQRTQRAYD
Sbjct: 250 GNTIAVQADMPYSGLTTFGTAFLSKFECSQMPHSLLEHITFVDTPGVLSGEKQRTQRAYD 309

Query: 171 FTGVTSWFAAKCDLILLLFDPHKLDVSDEFKRVISSLRGHDDKIRVVLNKADQVDTQQVR 230
           FTGVTSWFAAKCDLILLLFDPHKLDVSDEFKRVISSL GHDDKIRVVLNKADQVDTQQ+ 
Sbjct: 310 FTGVTSWFAAKCDLILLLFDPHKLDVSDEFKRVISSLHGHDDKIRVVLNKADQVDTQQLM 369

Query: 231 ILFNNVLFWTL 241
            ++   L W+L
Sbjct: 370 RVY-GALMWSL 379


>GSVIVT01007243001 assembled CDS
          Length = 575

 Score =  345 bits (885), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 164/191 (85%), Positives = 177/191 (92%), Gaps = 1/191 (0%)

Query: 51  TSSDFDAKPMVMLLGQYSTGKTTFIKHLLKTSYPGAHIGPEPTTDRFVVVMSGTDERSIP 110
           T SDFDAKPMVMLLGQYSTGKTTFIKHLL  ++PGAHIGPEPTTDRFVVVMSG DERSIP
Sbjct: 220 THSDFDAKPMVMLLGQYSTGKTTFIKHLLGCNFPGAHIGPEPTTDRFVVVMSGPDERSIP 279

Query: 111 GNTVAVQADMPFNGLTTFGTAFLSKFECSQMPHPLLEHITFVDTPGVLSGEKQRTQRAYD 170
           GNT+AV A+MPFNGLTTFG AFLSKFECSQ+PH LLEHITFVDTPGVLSGEKQRTQR+YD
Sbjct: 280 GNTIAVNAEMPFNGLTTFGGAFLSKFECSQIPHSLLEHITFVDTPGVLSGEKQRTQRSYD 339

Query: 171 FTGVTSWFAAKCDLILLLFDPHKLDVSDEFKRVISSLRGHDDKIRVVLNKADQVDTQQVR 230
           FTGV SWFAAKCDLILLLFDPHKLD+SDEFKRVI+SLRG+DDKIRVVLNKADQVDTQQ+ 
Sbjct: 340 FTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDTQQLM 399

Query: 231 ILFNNVLFWTL 241
            ++   L W+L
Sbjct: 400 RVY-GALMWSL 409