Jatropha Genome Database

JcCB0203531.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0203531.20 - phase: 0 
         (269 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017324001 assembled CDS                                       150   7e-37
GSVIVT01015550001 assembled CDS                                       148   3e-36
GSVIVT01013133001 assembled CDS                                       112   2e-25
GSVIVT01027919001 assembled CDS                                        97   5e-21
GSVIVT01028428001 assembled CDS                                        93   2e-19
GSVIVT01032859001 assembled CDS                                        72   2e-13
GSVIVT01024773001 assembled CDS                                        68   5e-12

>GSVIVT01017324001 assembled CDS
          Length = 289

 Score =  150 bits (379), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 80/143 (55%), Positives = 98/143 (68%), Gaps = 3/143 (2%)

Query: 129 DLSHERMDNYYQIMIETYPGDALLLANYAKFLKEVRGDNVKAEKVCEKALMANARDGDVL 188
           +  HE  D YYQ MIE  P +AL L NYAKFLKEVRGD VKAE+ C +A++ N  DG+VL
Sbjct: 147 NYGHESTDVYYQKMIEANPENALFLGNYAKFLKEVRGDLVKAEEYCGRAILVNPSDGNVL 206

Query: 189 SMYGDLIWNNHKDNARAQTYFDEAVQSSPDDCYVLASYARFLWDAGEEEEEK---EIQLS 245
           S Y DLIWNN KD  RA+TYF++AV+ +PDDCYVLASYA FLW+  EE+EE    E   +
Sbjct: 207 SFYADLIWNNQKDAQRAETYFNQAVRVAPDDCYVLASYAHFLWETEEEDEEDSRYETATA 266

Query: 246 NLSTCAPSHNNLSQGYAHLAAAS 268
           N    +PS       ++ LAAAS
Sbjct: 267 NTHGFSPSFFPGGPFHSPLAAAS 289


>GSVIVT01015550001 assembled CDS
          Length = 288

 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 83/97 (85%)

Query: 135 MDNYYQIMIETYPGDALLLANYAKFLKEVRGDNVKAEKVCEKALMANARDGDVLSMYGDL 194
           M++YY+ MIE  PG+ALLL NYA+FLKEVRGD +KAE+ C +A++AN  DG++LS++ DL
Sbjct: 152 MESYYRTMIEANPGNALLLGNYARFLKEVRGDYIKAEEYCGRAILANPNDGNILSLFADL 211

Query: 195 IWNNHKDNARAQTYFDEAVQSSPDDCYVLASYARFLW 231
           IW  HKD+ RA++YFD+AV++SPDDC+VLASYA FLW
Sbjct: 212 IWQVHKDSDRAESYFDQAVKASPDDCFVLASYAHFLW 248


>GSVIVT01013133001 assembled CDS
          Length = 178

 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/101 (49%), Positives = 73/101 (72%)

Query: 134 RMDNYYQIMIETYPGDALLLANYAKFLKEVRGDNVKAEKVCEKALMANARDGDVLSMYGD 193
           ++  YY+ M++  PGD+LLL NY KFL EV  D ++AE+   +A++A+  DG+VLS+Y  
Sbjct: 59  KLATYYEEMLKLNPGDSLLLRNYGKFLHEVEKDAIRAEEYYGRAILASPGDGEVLSLYAK 118

Query: 194 LIWNNHKDNARAQTYFDEAVQSSPDDCYVLASYARFLWDAG 234
           LIW   +D  RAQ YFD+AV +SP+DC V+ SYA+F+W+A 
Sbjct: 119 LIWETERDQDRAQCYFDQAVSASPNDCMVMGSYAQFMWEAE 159


>GSVIVT01027919001 assembled CDS
          Length = 531

 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 69/99 (69%)

Query: 134 RMDNYYQIMIETYPGDALLLANYAKFLKEVRGDNVKAEKVCEKALMANARDGDVLSMYGD 193
           +++ +Y+ M+E  P + L L NYA+FL + +G+  +AE+   +A++A+  DG+++S Y  
Sbjct: 403 KVEEHYKKMVEENPCNPLFLRNYAQFLFQTKGELQQAEEYYSRAILADPGDGEIMSQYAK 462

Query: 194 LIWNNHKDNARAQTYFDEAVQSSPDDCYVLASYARFLWD 232
           L W  H D  +A +YF +AVQ++P D +VLA+YARFLW+
Sbjct: 463 LAWELHHDRDKALSYFKQAVQATPGDSHVLAAYARFLWE 501



 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 46/125 (36%), Positives = 75/125 (60%), Gaps = 1/125 (0%)

Query: 135 MDNYYQIMIETYPGDALLLANYAKFLKEVRGDNVKAEKVCEKALMANARDGDVLSMYGDL 194
           ++ YY+ M+   P + L L NYA+ L+  +GD  +AE+   +A +A+ +DG++L  Y  L
Sbjct: 238 VEEYYRRMVNEDPCNPLFLRNYAQLLQS-KGDLQRAEEYYSRATLADPQDGEILMQYAKL 296

Query: 195 IWNNHKDNARAQTYFDEAVQSSPDDCYVLASYARFLWDAGEEEEEKEIQLSNLSTCAPSH 254
           IW+ H+D ARA +YF+ A + + DD +VLA+ A FLWD  +E E+   +   +       
Sbjct: 297 IWDVHRDQARALSYFERAAKVASDDSHVLAANASFLWDIEDEGEDDTAEQGLVEEGLSEF 356

Query: 255 NNLSQ 259
           +NL Q
Sbjct: 357 HNLDQ 361


>GSVIVT01028428001 assembled CDS
          Length = 121

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 61/90 (67%)

Query: 142 MIETYPGDALLLANYAKFLKEVRGDNVKAEKVCEKALMANARDGDVLSMYGDLIWNNHKD 201
           M+E  P + L L NYA+FL + + D   AE+   +A++A+ RDG++LS Y  L+W  H D
Sbjct: 1   MLEENPSNPLFLRNYAQFLYQSKHDLQAAEEYLCRAILADPRDGEILSQYAKLVWELHHD 60

Query: 202 NARAQTYFDEAVQSSPDDCYVLASYARFLW 231
             RA +YF+ AVQ++P+D +V A+YA FLW
Sbjct: 61  QDRASSYFERAVQAAPEDSHVQAAYASFLW 90


>GSVIVT01032859001 assembled CDS
          Length = 311

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 58/105 (55%)

Query: 130 LSHERMDNYYQIMIETYPGDALLLANYAKFLKEVRGDNVKAEKVCEKALMANARDGDVLS 189
           + + R D  YQI I   P + LL  NY +FL+    D  +AE+  ++A+     DG+ L+
Sbjct: 194 IEYFRTDLLYQIRISEDPNNPLLFCNYGQFLRLFARDQDRAEECFKRAVEVEPEDGEALN 253

Query: 190 MYGDLIWNNHKDNARAQTYFDEAVQSSPDDCYVLASYARFLWDAG 234
            Y + +W   KD   A+  F +A+ + P + Y +++YA FLW+ G
Sbjct: 254 QYANFLWMVRKDLWGAEERFLQAMAAEPGNPYHVSNYATFLWNTG 298


>GSVIVT01024773001 assembled CDS
          Length = 469

 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 56/104 (53%)

Query: 134 RMDNYYQIMIETYPGDALLLANYAKFLKEVRGDNVKAEKVCEKALMANARDGDVLSMYGD 193
           R +  YQ+ +   P + LLLANYA+FL  V  D  +AE+  ++A+     D +  + Y  
Sbjct: 352 RAELLYQMGLAREPNNPLLLANYAQFLYLVAHDYDRAEEYFKRAIAVEPPDAEAYNKYAS 411

Query: 194 LIWNNHKDNARAQTYFDEAVQSSPDDCYVLASYARFLWDAGEEE 237
            +W   KD   A+  + EA+ + P + Y  A+YA FLW  G ++
Sbjct: 412 FLWVAKKDLWAAEETYLEAIAADPSNTYYAANYAHFLWSTGGDD 455