Jatropha Genome Database

JcCB0203531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0203531.10 + phase: 0 /partial
         (148 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035857001 assembled CDS                                        97   3e-21
GSVIVT01015552001 assembled CDS                                        70   5e-13

>GSVIVT01035857001 assembled CDS
          Length = 439

 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/148 (47%), Positives = 89/148 (60%), Gaps = 27/148 (18%)

Query: 1   IPPTRPKSPKLGRRKSSSPVDSEGNNGENSRPGRLSLDEKVSTNRSAKGPSPIHSKKPQR 60
           IPPTR KSPKLGR+KSS   +SEG++  + R GRLSLDEKVS N  AKG SP H KKP R
Sbjct: 317 IPPTRAKSPKLGRKKSSPAPESEGSS--SHRSGRLSLDEKVSQNNPAKGISPGHPKKPLR 374

Query: 61  KSLPKLPSEKTSLSNATNDEKTPLSKALIKENPPTSNQMTEDASAQKQEAI-IPRALASE 119
           KSLPKLPSE+T+LS +TN+       A +               +Q+QE + +P    S 
Sbjct: 375 KSLPKLPSERTNLSKSTNE------AAFL---------------SQQQEPVQVPDPSKS- 412

Query: 120 EIEAQIDEVVVVREQAEPTLLQEPIASE 147
             +   D+   V EQA+ T+ QEP A E
Sbjct: 413 --QPDADDKSEVEEQAQQTMFQEPSALE 438


>GSVIVT01015552001 assembled CDS
          Length = 424

 Score = 69.7 bits (169), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/79 (50%), Positives = 55/79 (69%)

Query: 1   IPPTRPKSPKLGRRKSSSPVDSEGNNGENSRPGRLSLDEKVSTNRSAKGPSPIHSKKPQR 60
           +PPT+ KSPKL  +K+     +E N+ +++R GRLSLDEK + N   K  SP   KKP R
Sbjct: 285 MPPTKAKSPKLSCQKNPPMAVTEENSSQSTRLGRLSLDEKTTQNGPTKRSSPQQLKKPLR 344

Query: 61  KSLPKLPSEKTSLSNATND 79
           KSLPKLPS+KT+L++ T +
Sbjct: 345 KSLPKLPSQKTTLASGTEN 363