Jatropha Genome Database

JcCB0203341.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0203341.10 + phase: 0 /partial
         (127 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027662001 assembled CDS                                       226   3e-60

>GSVIVT01027662001 assembled CDS
          Length = 371

 Score =  226 bits (575), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 111/127 (87%), Positives = 115/127 (90%)

Query: 1   RPFQGGFGSITKEGRGQGKRFGVDQYEMGPFSRDPQLLENLKLGEGAKGVYISIDVDCLD 60
           R  Q G  SIT EGR QGKRFGV+QYEM  FSRD  +LENLKLGEG KGVYIS+DVDCLD
Sbjct: 242 RLLQVGLRSITSEGREQGKRFGVEQYEMRTFSRDRHILENLKLGEGVKGVYISLDVDCLD 301

Query: 61  PAFAPGVSHIEPGGLSFRDVLNILHNLQADVVAADVVEFNPQRDTVDGMTAMVAAKLVRE 120
           PAFAPGVSHIEPGGLSFRDVLNILHNLQADVVAADVVEFNPQRDTVDGMTAMVAAKLVRE
Sbjct: 302 PAFAPGVSHIEPGGLSFRDVLNILHNLQADVVAADVVEFNPQRDTVDGMTAMVAAKLVRE 361

Query: 121 LTAKISK 127
           LTAK+SK
Sbjct: 362 LTAKMSK 368