Jatropha Genome Database

JcCB0202361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0202361.10 - phase: 0 
         (298 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020111001 assembled CDS                                       247   6e-66
GSVIVT01021556001 assembled CDS                                       187   6e-48
GSVIVT01008089001 assembled CDS                                       138   3e-33
GSVIVT01017641001 assembled CDS                                        65   4e-11
GSVIVT01019973001 assembled CDS                                        60   1e-09
GSVIVT01011424001 assembled CDS                                        55   4e-08

>GSVIVT01020111001 assembled CDS
          Length = 640

 Score =  247 bits (630), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 141/303 (46%), Positives = 175/303 (57%), Gaps = 55/303 (18%)

Query: 1   MKRGKSDTRLDKFDVFVSLSRQRSIQXXXXXXXXXXXXXXXEIPFVFNTGFSAVSQE--- 57
           MKRGK       FD  V  SR +S +               EIP V  TGF ++  +   
Sbjct: 1   MKRGK-------FDTLVPTSRLKSFKILAGLLFLYLIFMSFEIPLVLRTGFGSLPGDGFN 53

Query: 58  -----TLTRPSLLQSEEDLQDKDAPTRPLLWVSHNSGQPTQSQT---RVGSYKRPPVNIL 109
                  ++  +L+SE+D+ +KDAP+RP   VS    Q ++ +    R+  YK+     +
Sbjct: 54  GFLGDAFSQQFMLESEQDMAEKDAPSRPSFRVSKGLSQSSRFRAPARRMREYKK-----V 108

Query: 110 SSLNFDPKTFDPTKKDGSVELHKSAKTAWEVGRRLWEGIESGRLQVSKVNKPENLSESCP 169
           S L F     +   KDG  ELHKSAK AWEVG+ LWE ++SG +QV    K +N SESCP
Sbjct: 109 SGLAFHGGLLN--SKDGYSELHKSAKHAWEVGKTLWEKLDSGEIQVESKRKAQNQSESCP 166

Query: 170 HSATLSGSEFLKRGKVVELPCGLTLGSHVTVVGKPRGAHAEKNPKIALLKEGEEPLMVSQ 229
           HS  LSGSEF  R K++ LP                                ++ +MVSQ
Sbjct: 167 HSIALSGSEFQDRNKIMVLP------------------------------YEDQSVMVSQ 196

Query: 230 FMMELQGLKTVEGEDPPRILHFNPRLRGDWSGKPVIEQNTCYRMQWGTALRCEGWKSKAD 289
           FMMELQGLKTV+GEDPPRILHFNPRL+GDWSGKPVIEQNTCYRMQWG+ALRCEGWKS+AD
Sbjct: 197 FMMELQGLKTVDGEDPPRILHFNPRLKGDWSGKPVIEQNTCYRMQWGSALRCEGWKSRAD 256

Query: 290 EET 292
           EET
Sbjct: 257 EET 259


>GSVIVT01021556001 assembled CDS
          Length = 373

 Score =  187 bits (474), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 123/173 (71%), Gaps = 4/173 (2%)

Query: 123 KKDGSVEL---HKSAKTAWEVGRRLWEGIESGRLQVSKVNKP-ENLSESCPHSATLSGSE 178
           +++G+ EL    + A  AW +G + WE +E+  L+ SK N   E   ESCP   +++G E
Sbjct: 97  RRNGTSELSVLERMADEAWTLGLQAWEDVENFDLKESKQNPIIEGKLESCPWWLSMNGDE 156

Query: 179 FLKRGKVVELPCGLTLGSHVTVVGKPRGAHAEKNPKIALLKEGEEPLMVSQFMMELQGLK 238
           F +  ++V LPCGL  GS +TVVG P  AH E  P++A L+ G+  +MVSQFM+ELQGLK
Sbjct: 157 FSRSDRMVFLPCGLAAGSSITVVGTPHYAHREYVPQLARLRNGDAMVMVSQFMVELQGLK 216

Query: 239 TVEGEDPPRILHFNPRLRGDWSGKPVIEQNTCYRMQWGTALRCEGWKSKADEE 291
           +V+GEDPP+ILH NPRL+GDWS +PVIE NTCYRMQWGTA RC+G  S+ D++
Sbjct: 217 SVDGEDPPKILHLNPRLKGDWSRRPVIEHNTCYRMQWGTAQRCDGLPSRKDDD 269


>GSVIVT01008089001 assembled CDS
          Length = 448

 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 60/67 (89%), Positives = 65/67 (97%)

Query: 226 MVSQFMMELQGLKTVEGEDPPRILHFNPRLRGDWSGKPVIEQNTCYRMQWGTALRCEGWK 285
           MVSQF++ELQGLKTV+GEDPPRILH NPR++GDWS KPVIEQNTCYRMQWGTALRCEGWK
Sbjct: 1   MVSQFILELQGLKTVDGEDPPRILHLNPRIKGDWSRKPVIEQNTCYRMQWGTALRCEGWK 60

Query: 286 SKADEET 292
           SKADEET
Sbjct: 61  SKADEET 67


>GSVIVT01017641001 assembled CDS
          Length = 637

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 68/160 (42%), Gaps = 27/160 (16%)

Query: 132 KSAKTAWEVGRRLWEGIESGRLQVSKVNKPEN---LSESCPHSATLSGSEFLKRGKVVEL 188
           K A +AW   + LW  IE  +       + EN    ++ CP S +         G ++E 
Sbjct: 117 KEASSAW---KDLWSAIEEDKASKFNNTQSENGNPEAKDCPFSVSTFDKTVYSSGCILEF 173

Query: 189 PCGLTLGSHVTVVGKPRGAHAEKNPKIALLKEGEEPLMVSQFMMELQGLKTVEGEDPPRI 248
           PCGL   S +TV+G P G +                     F +EL GL+     +PP +
Sbjct: 174 PCGLVEDSSITVIGIPDGRNG-------------------SFQVELVGLQLPGEREPPIL 214

Query: 249 LHFNPRLRGD-WSGKPVIEQNT-CYRMQWGTALRCEGWKS 286
           LH+N  L GD  + +PVI QNT      WG   RC    S
Sbjct: 215 LHYNVSLPGDKLTEEPVIVQNTWTNETGWGKEERCHAHAS 254


>GSVIVT01019973001 assembled CDS
          Length = 636

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 28/160 (17%)

Query: 127 SVELHKSAKTAWEVGRRLWEGIESGRLQVSKVNKPENLSE-SCPHSAT-LSGSEFLKRGK 184
           ++E  K A  AW     L   +E  +L  +  +  +   E  CP+    ++ +E    G 
Sbjct: 108 ALEAIKEAGIAW---TSLLASVEEEKLGYTNESSVKRAKEKQCPYFLNKMNATELGSNGY 164

Query: 185 VVELPCGLTLGSHVTVVGKPRGAHAEKNPKIALLKEGEEPLMVSQFMMELQGLKTVEGE- 243
            + +PCGLT GS +T++G P G                   ++  F ++L G + + GE 
Sbjct: 165 KLGVPCGLTQGSSITIIGIPDG-------------------LLGNFRIDLTG-EPLPGEP 204

Query: 244 DPPRILHFNPRLRGD-WSGKPVIEQNT-CYRMQWGTALRC 281
           DPP ILH+N RL GD  +  PVI QNT      WG   RC
Sbjct: 205 DPPIILHYNVRLHGDKITEDPVIVQNTWTIAHDWGEEERC 244


>GSVIVT01011424001 assembled CDS
          Length = 635

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 51/117 (43%), Gaps = 22/117 (18%)

Query: 168 CPHSAT-LSGSEFLKRGKVVELPCGLTLGSHVTVVGKPRGAHAEKNPKIALLKEGEEPLM 226
           CPH    ++ +E       + +PCGL  GS VT++G P G                   +
Sbjct: 146 CPHFLNKMNATELGDNSYKLRIPCGLVQGSSVTIIGIPNG-------------------L 186

Query: 227 VSQFMMELQGLKTVEGEDPPRILHFNPRLRGD-WSGKPVIEQNTCYRMQ-WGTALRC 281
           +  F ++L G       DP  ILH+N RL GD  +  PVI QNT      WG   RC
Sbjct: 187 LGNFRIDLTGEPHPGEPDPSIILHYNVRLHGDKITEDPVIVQNTWTAAHDWGEEERC 243