Jatropha Genome Database

JcCB0202011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0202011.10 + phase: 0 /partial
         (212 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033696001 assembled CDS                                       274   2e-74

>GSVIVT01033696001 assembled CDS
          Length = 1722

 Score =  274 bits (701), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 130/197 (65%), Positives = 153/197 (77%)

Query: 1    ICMNTKIRATAFAAFGALSSYGVGAQREIFLEQIHAATPRLVLHLHDDDISVRHACRNTL 60
            IC N K+RA AFA  G+LS+YGVGAQRE FLEQ+HAA PRLVLH+HDDD+SVR ACR+TL
Sbjct: 1518 ICTNVKMRANAFAGLGSLSNYGVGAQREAFLEQVHAAFPRLVLHIHDDDLSVRLACRSTL 1577

Query: 61   KHIAPLMKIEGLASLSNSHCCNSDHRSDYEGFLRDFTRLLTQYLPSRVDSYMASTIQAID 120
            K IAPLM++EG+ +L N+H  NSDHRSDYE F+RD ++  +  L SRVD+YMASTIQA D
Sbjct: 1578 KRIAPLMELEGMFALFNTHSFNSDHRSDYEDFVRDLSKQFSLRLSSRVDTYMASTIQAFD 1637

Query: 121  APWPIIQANXXXXXXXXXXXXDDPRILALYYAQVFGMLVGKMNQSADAVVRATCSSALGL 180
            APWP IQAN            DD  ILALYY +VFGML+ KM+ SAD +VRATCSSALGL
Sbjct: 1638 APWPTIQANAIYFSSSMLSVSDDQHILALYYTRVFGMLISKMSHSADEIVRATCSSALGL 1697

Query: 181  LLRSTNSLSWRTARLDR 197
            LL+STN L WR + LDR
Sbjct: 1698 LLKSTNLLQWRASGLDR 1714