Jatropha Genome Database

JcCB0201931.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0201931.20 + phase: 0 /partial
         (179 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034416001 assembled CDS                                        96   9e-21

>GSVIVT01034416001 assembled CDS
          Length = 344

 Score = 95.9 bits (237), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 50/62 (80%)

Query: 89  QEDDNELPSQGLFPLAGGIVALGKFDALHIGHRELAIQASKVGSPYLLSFVGMAEVLGWE 148
           Q    +L    +    GGIVALGKFDALHIGHRELAIQAS+VG+P+LLSFVGMAEVLGWE
Sbjct: 58  QTKKKKLQCSSMAATVGGIVALGKFDALHIGHRELAIQASRVGAPFLLSFVGMAEVLGWE 117

Query: 149 PR 150
           PR
Sbjct: 118 PR 119