Jatropha Genome Database

JcCB0201851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0201851.10 - phase: 0 /TE/partial
         (323 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01006319001 assembled CDS                                       102   3e-22
GSVIVT01014104001 assembled CDS                                        60   2e-09
GSVIVT01034745001 assembled CDS                                        59   4e-09
GSVIVT01037631001 assembled CDS                                        57   1e-08
GSVIVT01038695001 assembled CDS                                        52   3e-07

>GSVIVT01006319001 assembled CDS
          Length = 604

 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 112/205 (54%), Gaps = 28/205 (13%)

Query: 102 LTKLMNFKYQEGTFVADHLSEMQVTIHQLSNMGIKFDDKILGLMVLASLPESWETLKISI 161
           + KL N K  E   VA HL+E     + ++++ I F+D+I  L+VLASLP SWET++++I
Sbjct: 1   MKKLFNLKMTENASVAQHLNEF----NTITSVEIDFNDEIRALIVLASLPNSWETMRMAI 56

Query: 162 TNSTPHSGVSWEFVKNAVLNEEMRRKAQNPSSSQSDIFLADAK----RNNQPRGRSQSRS 217
           +NST    + + ++++ +L EE+RR+    +     +   + +      N  RGRS+ R+
Sbjct: 57  SNSTGKENLKYNYIRDLILAEEIRRRNVGETLGSGSVLNLETRGRGNDRNSNRGRSKPRN 116

Query: 218 SNTRDKSRGRSNKFVNIVCHHCGKKGHIKRYCRKFKSDQEKIKGKAKKEESSDDEANVIA 277
           SN ++ S+ R ++ V   C +CGK  H +R C            K+ K+++ DD ANV+ 
Sbjct: 117 SN-QNISKSRLDQQVQ--CWNCGKTCHFRRQC------------KSPKKKNEDDSANVVT 161

Query: 278 EFQLFIEDTINLATQET--SWVIDS 300
           E    + D + LA       WV+DS
Sbjct: 162 E---EVHDALLLAVDSPLDDWVLDS 183


>GSVIVT01014104001 assembled CDS
          Length = 1354

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 134/329 (40%), Gaps = 41/329 (12%)

Query: 1   MEARTSKMISLNGAKYHIWRNKMRDLLMVTKMHLPVFGSSKLE---DKTDEE------WA 51
           + +  S M   +G+ +  W  + +  L +  + L +      E   D T E+      W+
Sbjct: 377 LHSLASGMTIFDGSNFSEWYERGQFSLGILDLDLALISDKPPEATDDSTPEQVEQSKAWS 436

Query: 52  FEHEQVCGYIRQFVDDNVYNHICNETHARTLWDKLEQLY--ASKSGNNQLFYLTKLMNFK 109
             +     ++R  + +N+   +     A      +E+ +  A KS    L  + +L   K
Sbjct: 437 KSNRLSLMFMRMTIANNIKTSLPQTEFASEFLKSVEERFKRADKSLAGTL--MAELTTMK 494

Query: 110 YQEGTFVADHLSEMQVTIHQLSNMGIKFDDKILGLMVLASLPESWETLKISI-TNSTPHS 168
           Y     +  H+  M     +L  +G+  D+  L   VL SLP  +   KI   TNS    
Sbjct: 495 YDGQKGIQQHILNMTEKTAKLKALGMGMDESFLVQFVLNSLPSQFAPFKIHYNTNSD--- 551

Query: 169 GVSWEF--VKNAVLNEEMRRKAQNPSSSQSDIFLADAKRNNQPRGRS-QSRSSNTRDKSR 225
              W    + +  + EE+R + +  + + +       K+    +GR+   + S   + S+
Sbjct: 552 --QWNLNELTSKCIQEEVRLRQEGHNLALAVTHGVTKKKGKFKKGRNFPPKKSGPGEGSQ 609

Query: 226 GRSNKFVNIVCHHCGKKGHIKRYCRKFKSDQEKIKGKAKKEESSDDEANVIAEFQLFIED 285
               KF  + C+ CGKKGH+K+ C         IK KA  E+   + + V  E       
Sbjct: 610 NHDGKF-TVSCYFCGKKGHVKKDC---------IKRKAWFEKRGINLSFVCYE------- 652

Query: 286 TINLA-TQETSWVIDSGATLHATSRRENF 313
             NLA     +W IDSGAT H T+  + F
Sbjct: 653 -SNLAEVPSNTWWIDSGATTHVTNLMQGF 680


>GSVIVT01034745001 assembled CDS
          Length = 2196

 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 76/356 (21%), Positives = 152/356 (42%), Gaps = 53/356 (14%)

Query: 5   TSKMISL-NGAKYHIWRNKMRDLL--------MVTKMHLPVFGSSK--LEDKTDEEWAFE 53
           TS +IS+ NG  YHIW  KMR  L        ++++   P  G++    + K  EE   +
Sbjct: 7   TSSVISVFNGEHYHIWAVKMRFYLRSQGLWNVVMSEADPPPLGANPTVAQMKAYEEEKLK 66

Query: 54  HEQVCGYIRQFVDDNVYNHICNETHARTLWDKLEQLYASKSGNNQLFYLTKLMNFK---- 109
            ++    +   + D+++  I N    + +WDKL+  +      ++ F   +L+  K    
Sbjct: 67  KDKAITCLHSGLTDHIFTKIMNLETPKLVWDKLQGEFE----GSERFKTVRLLKLKREFE 122

Query: 110 ---YQEGTFVADHLSEMQVTIHQLSNMGIKFDDKILGLMVLASLPESWETLKISITNSTP 166
               ++  FV D+   +   ++Q+  +G  F D+ +   ++  +P+ +E    +I  S  
Sbjct: 123 LMKMKDDEFVKDYSGRLMDVVNQIRLLGEAFTDQKVVEKIMVLVPQKFEAKISAIEESCD 182

Query: 167 HSGVSWEFVKNAVLNEEMRRKAQNPSSSQSDIFLA--DAKRNNQPRGRSQSRSSNTRDKS 224
              ++   + + +  +E R   +   +++   F A  + K +   +G+   +++  + + 
Sbjct: 183 LQTLTIVELTSKLHAQEQRVLMRGDEATEGA-FQANHEGKNSGNLQGKKFFKNNKEKAEG 241

Query: 225 RGRSNKFVNIV---------------------CHHCGKKGHIKRYCRKFKSDQEKIK--- 260
             R  KF +                       C+ C K GH ++YCR  K   ++     
Sbjct: 242 SSRKGKFPSCSHCRRTNHAEKDCWHKGKPLFNCNFCNKLGHSEKYCRAKKKQSQQQPKQN 301

Query: 261 GKAKKEESSDDEANVIAEFQLFIEDTINLATQET-SWVIDSGATLHATSRRENFSS 315
               +E+ +DDE   +A   L    +  L++ E  +W+IDSG T H T     F+S
Sbjct: 302 ANVTEEDKNDDEHLFMASQAL---SSHELSSHELNTWLIDSGCTSHMTKYLSIFTS 354


>GSVIVT01037631001 assembled CDS
          Length = 1940

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 116/272 (42%), Gaps = 39/272 (14%)

Query: 65   VDDNVYNHICNETHARTLWDKLEQLYAS--KSGNNQLFYLTKLMNFK-YQEGTFVADHLS 121
            V  +++  I     A  +W+ L++ Y    +  N Q+  L +    K  +E   V D+ +
Sbjct: 796  VSPSIFIKIMKIDSAAEIWEYLKEEYKGDERIKNMQVMNLIREFEMKKMRESDAVKDYAA 855

Query: 122  EMQVTIHQLSNMGIKFDDKILGLMVLASLPESWETLKISITNSTPHSGVSWEFVKNAVLN 181
            ++     ++  +G +F ++ +   +L +LPE +E    S+ NS   S +S   + +++  
Sbjct: 856  QLLSIADKVRLLGKEFSNEKIVQKILVTLPEKYEATISSLENSKDLSTISLTELLHSLEA 915

Query: 182  EEMRRKAQNPSSSQSDIFLADAKRNNQPRGRSQSRSSNTRDKSRGRSNKFV--------- 232
             E RR  +   +++   F A  ++N    G    + +N +     + N            
Sbjct: 916  VEQRRLMRQGDTAEGA-FQARMQKNA---GHKNGKVNNNKSCGNNQKNGVFPPCPHCKKT 971

Query: 233  -----------NIVCHHCGKKGHIKRYCRKFKSDQEKIKGKAKKEESSDDEANVIAEFQL 281
                       ++ C+ CGK+GH++R C            K +++E ++   +   E QL
Sbjct: 972  NHSPKKCWWRPDVKCNKCGKQGHVERIC------------KNQQQEETNAVVDYCQEEQL 1019

Query: 282  FIEDTINLATQETSWVIDSGATLHATSRRENF 313
            F        +   SW++DSG T H T+ ++ F
Sbjct: 1020 FAATCFANKSTSKSWLVDSGCTNHMTNNQDLF 1051


>GSVIVT01038695001 assembled CDS
          Length = 740

 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 97/221 (43%), Gaps = 28/221 (12%)

Query: 109 KYQEGTFVADHLSEMQVTIHQLSNMGIKFDDKILGLMVLASLPESWETLKISITNSTPHS 168
           K +E   V D+ +++     ++  +G +F ++ +   +L +LPE +E +  S+ NS   S
Sbjct: 14  KMRESDAVKDYAAQLLSIADKVRLLGKEFSNEKIVQKILVTLPEKYEAIISSLENSKDLS 73

Query: 169 GVSWEFVKNAVLNEEMRRKAQNPSSSQSDIFLADAKRNNQPRGRSQSRSSNTRDKSRG-- 226
            +S   + +++   E RR  +   +++        K      G+  ++ S   ++  G  
Sbjct: 74  TISLTELLHSLEAVEQRRLMRQGDTAEGAFQARMQKNAGHKNGKVNNKKSCGNNQKNGVF 133

Query: 227 -------RSNKFV-------NIVCHHCGKKGHIKRYCRKFKSDQEKIKGKAKKEESSDDE 272
                  ++N          ++ C+ CGK+G+++R C            K +++E +   
Sbjct: 134 PPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGNMERIC------------KNQQQEETSAA 181

Query: 273 ANVIAEFQLFIEDTINLATQETSWVIDSGATLHATSRRENF 313
            +   E QLF        +   SW++DSG T H T+ ++ F
Sbjct: 182 VDYCQEEQLFAATCFANKSTSKSWLVDSGCTNHMTNNQDLF 222