Jatropha Genome Database

JcCB0200941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0200941.10 + phase: 0 
         (739 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027058001 assembled CDS                                       584   e-167
GSVIVT01019501001 assembled CDS                                       454   e-128
GSVIVT01032655001 assembled CDS                                        65   2e-10
GSVIVT01013015001 assembled CDS                                        54   3e-07
GSVIVT01005090001 assembled CDS                                        53   7e-07

>GSVIVT01027058001 assembled CDS
          Length = 720

 Score =  584 bits (1505), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 326/696 (46%), Positives = 408/696 (58%), Gaps = 119/696 (17%)

Query: 52  PLRNHGSH-DGPNRVQHLEKDRAELLRKLDELKEQLSRSYEVADKPKEKIPLNGRMAPSD 110
           PLR+  S  DG NRV++   D A L+R+LDELK++L+R+                     
Sbjct: 119 PLRDGSSSVDGGNRVEYFGHDPARLIRQLDELKDRLNRT--------------------- 157

Query: 111 PYVGSDTWFPSASSMPDRTSMQFLAPDKHATRXXXXXXXXXXXXCTNGHEMAMHNFHPSM 170
                D WFP++SS P R+SM F   DKH +               N HE  MH  +PSM
Sbjct: 158 ----CDAWFPTSSSGPRRSSMPFFMLDKHVSEPPYFQHYTKPFPYDNRHEKGMHGSYPSM 213

Query: 171 HKSNHIPGFGDPFG-----LKRAPPQLSGQYKQ-PPRQYFSRHHXXXXXXXXXXYTSNAT 224
           H SNHIPG+ D FG      +R P Q  G Y+Q PP  YFS  +          Y  +  
Sbjct: 214 HGSNHIPGYEDVFGPQMLRQRRPPDQAPGHYRQQPPYAYFSGGYMEPNSNPYEPYPHDPN 273

Query: 225 FHQPSCSCFHCFERHHGVSAPVPPSAFSNKRFPDVSNNPMFYQHENPGAFGPHNHDPRAT 284
            H PSCSCF C+ RH  V   +P +A  N+RFPD+ N+PM Y  ENP AFGP  ++PR  
Sbjct: 274 LHHPSCSCFLCYTRHQQVPGSIPTNALLNRRFPDIPNDPMSYHRENPVAFGPRVYNPRTA 333

Query: 285 VPPPLNFRGPQSYTRWPSDLNSEMCGFVRYRPRRVVLASGGRCCHPIAGGAPFFTCFNCF 344
            PPP+           PS  + E            VL +G   C P+AGGAPF TC NC 
Sbjct: 334 NPPPM-----------PSHDSQE------------VLLNGRHYCRPLAGGAPFITCCNCC 370

Query: 345 GLLQVPKKVLFMGKNQQKIRCGACSTVINFAVVNKKLVLSVNTEATHFPTEVNDSSTEII 404
            LL++PKK+L + KNQQKIRCGACS +I  AV   K+V S++ E      E++DS+ ++ 
Sbjct: 371 ELLRLPKKILLVKKNQQKIRCGACSAIIFLAVNRHKIVASIHEETEKTSKEIDDSTNQL- 429

Query: 405 KDSTSYSHGQMSRINANFSSDDYDNSGYDFQTIDSEPNAFLTGQGLNSIKHQEMNSFHTS 464
                           NFSSDDYDNS YDFQ++D E  +                     
Sbjct: 430 ----------------NFSSDDYDNSAYDFQSMDREAGS--------------------- 452

Query: 465 SLSTSEDENSPDALIAPREVINSVQEPIKXXXXXXXXXXXXQQHFDFSSNNNVVNRLGKG 524
                       A+++P    +S+QE                 HFD+SSNN  +NR G G
Sbjct: 453 --------QPKKAVLSPPPPGSSLQE-----------------HFDYSSNNLALNRFGNG 487

Query: 525 NRSSRSDQEKVITNKGAARQNSMKEASLATEIEVPFHEYANTGVSQDSGDANREDSQLKI 584
           N+SSRSD EKVI +K  ++Q+S+K+ S+ATE+EV F+E++NTGVSQDSGDA+RE   L I
Sbjct: 488 NQSSRSDHEKVIPSKAISQQSSVKDVSVATEMEVSFNEFSNTGVSQDSGDASREHDHLGI 547

Query: 585 NKGSDSFFANIIKKSFKDFSRSNQD-ERGRSNVSVNGHIIPDRLVKKAEKLAGPIHPGKY 643
           NKG + F A IIKK  +D SR NQ  E+GR+ V VNGH+IPDRLVKKAEKLAG IHPG+Y
Sbjct: 548 NKGEEPFLAGIIKKDLRDSSRPNQTIEQGRNIVMVNGHLIPDRLVKKAEKLAGTIHPGEY 607

Query: 644 WYDARAGFWGVIGGPCLGIIPPFIEEFDYPMPEDCAGGNTGVFVNGRELHQKDLDLLTGR 703
           WYD  AGFWG++GG CLGIIPPFIEEF YPMPE+CA GNTGV+VNGREL+QKDLDLL  R
Sbjct: 608 WYDFYAGFWGMMGGRCLGIIPPFIEEFKYPMPENCAAGNTGVYVNGRELNQKDLDLLASR 667

Query: 704 GLPIDRDRSYIVEISGRVLDEETGEELDSLGKLAPT 739
           GLP  RDR Y ++ISG V D +TGE L+SLGKLAPT
Sbjct: 668 GLPTTRDRDYTIDISGGVQDRDTGEVLESLGKLAPT 703


>GSVIVT01019501001 assembled CDS
          Length = 712

 Score =  454 bits (1167), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/463 (51%), Positives = 310/463 (66%), Gaps = 47/463 (10%)

Query: 279 HDPRATVP-PPLNFRGPQSYTRWPSDLNSEMCGFVRYRPRRVVLASGGRCCHPIAGGAPF 337
           H P  +   PP + R PQ +TRWP+  N                    R CHPI GGAPF
Sbjct: 278 HQPACSCSNPPSHPRDPQPHTRWPTHGNR-------------------RLCHPIVGGAPF 318

Query: 338 FTCFNCFGLLQVPKKVLFMGKNQQKIRCGACSTVINFAVVNKKLVLSVNTEATHFPTEVN 397
            TC+NCF LL+VP+K + M KNQ+K++CGACS V    V NKK+++SV T+      + +
Sbjct: 319 ITCYNCFELLKVPRKFMLMDKNQRKLQCGACSCVNFLEVENKKVIVSVPTQMKRRSPDAD 378

Query: 398 DSSTEIIKDSTSYSHGQMSRINANFSSDDYDNSGYDFQTIDSEPNAFLTGQGLNSIKHQE 457
           D S E++      SH  +   N N  S D                  L G+   + K Q 
Sbjct: 379 DGSCEVLDHYHRSSHAHL---NPNLPSKD----------------CILIGE---AAKRQG 416

Query: 458 MNSFHTSSLSTSEDENSPDALIAPREVINSVQEPIKXXXXXXXXXXXXQQHFDFSSNNNV 517
           + S   SS S++EDE SPD++I  R++ +S + P+K            Q++FD+SSN+  
Sbjct: 417 LLS---SSPSSTEDEESPDSMIGQRDISSSAELPLKEDVSPPLLASPLQENFDYSSNH-A 472

Query: 518 VNRLGKGNRSSRSDQEKVITNKGAARQNSMKEASLATEIEVPFHEYANTGVSQDSGDANR 577
           ++R GKGN+S R+D+EKVI NK  +RQNS+K+A++ATE+EV F+EY NTG+SQ+S + ++
Sbjct: 473 MSRHGKGNKSKRTDEEKVILNKATSRQNSVKDAAVATEMEVCFNEYLNTGLSQESVEVSK 532

Query: 578 EDSQLKINKGSDSFFANIIKKSFKDFSRSNQD-ERGRSNVSVNGHIIPDRLVKKAEKLAG 636
           ++ + K NKGSDSFFA +IKKSF+DF+RSN   +  +  VSVNG  IP+R VKKAEK AG
Sbjct: 533 DEDRPKNNKGSDSFFAGLIKKSFRDFTRSNHSMDNSKPKVSVNGQPIPERAVKKAEKQAG 592

Query: 637 PIHPGKYWYDARAGFWGVIGGPCLGIIPPFIEEFDYPMPEDCAGGNTGVFVNGRELHQKD 696
           P+HPG+YWYD RAGFWGV+G PCLGIIPPFIEEF+  MPEDC+ GNTGVFVNGRELHQKD
Sbjct: 593 PVHPGEYWYDFRAGFWGVMGQPCLGIIPPFIEEFNCSMPEDCSSGNTGVFVNGRELHQKD 652

Query: 697 LDLLTGRGLPIDRDRSYIVEISGRVLDEETGEELDSLGKLAPT 739
           LDLL  RGLP  RD+SYI+EISGRVLDE+TGEELDSLGKLAPT
Sbjct: 653 LDLLASRGLPTTRDKSYIIEISGRVLDEDTGEELDSLGKLAPT 695



 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 58/99 (58%), Positives = 73/99 (73%), Gaps = 4/99 (4%)

Query: 3   GWQHGDRDEMEGFRRVMRTEVEGVRFSTSNYPDEGPSNYNLDSSYSYGEPLRNHGSHDGP 62
           GW  G R+E+  FRR  R   E  RFSTS YPDEGPSN++  S Y YG+P+++H +  GP
Sbjct: 141 GWGVG-REELGAFRRNSR---EQGRFSTSPYPDEGPSNFHPGSFYGYGQPMKHHDNIGGP 196

Query: 63  NRVQHLEKDRAELLRKLDELKEQLSRSYEVADKPKEKIP 101
           NR ++LE+DR ELLRKLDELK+QLSRS  V DKP+E+ P
Sbjct: 197 NRAENLEQDRVELLRKLDELKDQLSRSCAVEDKPRERPP 235


>GSVIVT01032655001 assembled CDS
          Length = 1185

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 305  NSEMCGFVRYRPRRVVLASGGRCCHPIAGGAPFFTCFNCFGLLQVPKKVLFMGKNQQKIR 364
            N E   + + +P +V      R   PIAGGAPF TC++C  LLQ+P   L   +    +R
Sbjct: 983  NHEAKLYWKEKPHQV-----KRHIQPIAGGAPFLTCYHCSHLLQLPADFLLFKRRCHGLR 1037

Query: 365  CGACSTVINFAVVNKKLVLSVNTEAT 390
            CGAC  ++ F+V N+  ++     A 
Sbjct: 1038 CGACYELLKFSVENRTHIVQYTPNAV 1063


>GSVIVT01013015001 assembled CDS
          Length = 735

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 638 IHPGKYWYDARAGFWGVIGGPCLGIIPPFIEEFDYPMPEDCAGGNTGVFVNGRELHQKDL 697
           + PG+YWYD  +G WG  G     II   +  F   +  D + GNT V++NGRE+ + +L
Sbjct: 181 LKPGRYWYDKESGLWGKEGEKPDRIISSNLS-FSGKLSPDASNGNTEVYINGREITRLEL 239

Query: 698 DLLTGRGLPIDRDRSYIVEISGRVLDE 724
            +L    +   RD  + V   GR  +E
Sbjct: 240 RVLRLANVQCPRDTHFWVYDDGRYEEE 266


>GSVIVT01005090001 assembled CDS
          Length = 755

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 638 IHPGKYWYDARAGFWGVIGGPCLGIIPPFIEEFDYPMPEDCAGGNTGVFVNGRELHQKDL 697
           + PG YWYD  +G WG  G     II P +     P+  + + GNT VF+NGRE+ + +L
Sbjct: 204 LKPGNYWYDKVSGLWGKEGQKPSKIISPNL-SVGGPIRANASNGNTQVFINGREITKVEL 262

Query: 698 DLLTGRGL 705
            +L   G+
Sbjct: 263 RMLQLAGV 270