Jatropha Genome Database

JcCB0200811.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0200811.20 - phase: 0 /pseudo/partial
         (216 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009739001 assembled CDS                                       391   e-109
GSVIVT01037706001 assembled CDS                                        53   1e-07

>GSVIVT01009739001 assembled CDS
          Length = 378

 Score =  391 bits (1005), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 183/201 (91%), Positives = 194/201 (96%)

Query: 16  LFLLQDILDLAKYASVPVINGLTDYNHPCQIMADALTMIEHIGQLEGTKVVYVGDGNNIV 75
           +F  QDILDLAKYA+VPVINGLTDYNHPCQIMADALT+IEHIGQLEGTKVVYVGDGNNIV
Sbjct: 178 VFAHQDILDLAKYATVPVINGLTDYNHPCQIMADALTIIEHIGQLEGTKVVYVGDGNNIV 237

Query: 76  HSWLLLASVIPFHFVCACPKGFEPDAKTVEKAQLAGISKIEITNDPKEAVVGADVVYSDV 135
           HSWLLLA+V+PFHFVCACPKGFEPD KTV+KAQ AGISKIEITNDPKEAV GADVVYSDV
Sbjct: 238 HSWLLLAAVVPFHFVCACPKGFEPDEKTVQKAQQAGISKIEITNDPKEAVRGADVVYSDV 297

Query: 136 WASMGQKEEAAHRRKVFQGFQVDEDLMKIAGPKAYFMHCLPAERGVEVTDGVIEAPNSIV 195
           WASMGQKEEA++RR+VFQGFQVDE LMK+AGPKAYFMHCLPAERGVEVTDGV+EAPNSIV
Sbjct: 298 WASMGQKEEASYRRQVFQGFQVDEPLMKLAGPKAYFMHCLPAERGVEVTDGVLEAPNSIV 357

Query: 196 FPQAENRMHAQNAIMLHALGL 216
           FPQAENRMHAQNAIMLH LGL
Sbjct: 358 FPQAENRMHAQNAIMLHVLGL 378


>GSVIVT01037706001 assembled CDS
          Length = 265

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 19/192 (9%)

Query: 29  ASVPVIN-GLTDYNHPCQIMADALTMIEHIGQLEGTKVVYVGD---GNNIVHSWLLLASV 84
           A +P+IN G     HP Q + D  T+   IG+L+  KV  VGD   G  +     LLA  
Sbjct: 76  AEIPIINAGDGPGQHPTQALLDVYTIEREIGRLDRIKVGLVGDLANGRTVRSLAYLLAKY 135

Query: 85  --IPFHFVCACPKGFEPDAKTVEKAQLAGISKIEITNDPKEAVVGADVVYSDVWASMGQK 142
             +  +FV       + D K    ++  G+ + E + D  E     DVVY     +  Q+
Sbjct: 136 QDVKIYFVSPEVVKMKDDIKDYLTSK--GV-EWEESADLMEVASKCDVVYQ----TRIQR 188

Query: 143 EEAAHRRKVFQ----GFQVDEDLMKIAGPKAYFMHCLPAERGVEVTDGVIEAPNSIVFPQ 198
           E    R  +++     + VD D++ +    A  MH LP  R  E+T  V E   +  F Q
Sbjct: 189 ERFGERADLYEEARGKYIVDRDVLGVMQKHAVVMHPLP--RLDEITVDVDEDQRAAYFRQ 246

Query: 199 AENRMHAQNAIM 210
           A+N ++ + A++
Sbjct: 247 AKNGLYIRMALL 258