Jatropha Genome Database

JcCB0199171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0199171.10 + phase: 0 
         (159 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024952001 assembled CDS                                       237   2e-63
GSVIVT01016559001 assembled CDS                                       233   3e-62
GSVIVT01024086001 assembled CDS                                       181   1e-46

>GSVIVT01024952001 assembled CDS
          Length = 254

 Score =  237 bits (604), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 115/133 (86%), Positives = 124/133 (93%)

Query: 19  SAEMLVNLNIPWVILGHSERRALLNESNEFVADKVAYALSQGLKVIACIGETLEQRESGS 78
           SAEMLVNL IPWVILGHSERR+LL ESNEFV DKVAYALSQGLKVIAC+GETLEQRESGS
Sbjct: 80  SAEMLVNLGIPWVILGHSERRSLLAESNEFVGDKVAYALSQGLKVIACVGETLEQRESGS 139

Query: 79  TVAVVAAQTKAIADKISNWANVVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLSENVSA 138
           T+AVVAAQTKAIA+K+S+W N+VLAYEPVWAIGTGKVATPAQAQEVH ELRKWL +N   
Sbjct: 140 TMAVVAAQTKAIAEKVSSWDNIVLAYEPVWAIGTGKVATPAQAQEVHCELRKWLHDNAGD 199

Query: 139 EVAASTRIIYGGN 151
           EVAASTRIIYGG+
Sbjct: 200 EVAASTRIIYGGS 212


>GSVIVT01016559001 assembled CDS
          Length = 254

 Score =  233 bits (594), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 114/135 (84%), Positives = 122/135 (90%)

Query: 19  SAEMLVNLNIPWVILGHSERRALLNESNEFVADKVAYALSQGLKVIACIGETLEQRESGS 78
           SAEMLVNL IPWVI+GHSERR LLNESNEFV +KVAYALS+GLKVIAC+GETLEQRESGS
Sbjct: 80  SAEMLVNLGIPWVIIGHSERRLLLNESNEFVGEKVAYALSKGLKVIACVGETLEQRESGS 139

Query: 79  TVAVVAAQTKAIADKISNWANVVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLSENVSA 138
           T+ VVAAQTKAIADK+SNWANVVLAYEPVWAIGTGKVATPAQAQEVH ELR W   N S 
Sbjct: 140 TMEVVAAQTKAIADKVSNWANVVLAYEPVWAIGTGKVATPAQAQEVHSELRNWFQANASP 199

Query: 139 EVAASTRIIYGGNFS 153
           EVAA+ RIIYGG+ S
Sbjct: 200 EVAATIRIIYGGSVS 214


>GSVIVT01024086001 assembled CDS
          Length = 256

 Score =  181 bits (459), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 85/133 (63%), Positives = 103/133 (77%)

Query: 19  SAEMLVNLNIPWVILGHSERRALLNESNEFVADKVAYALSQGLKVIACIGETLEQRESGS 78
           S E L ++   WVILGHSERR ++ E ++F+  K AYALSQGLKVIACIGE L++RE+G 
Sbjct: 80  SVEQLKDIGCNWVILGHSERRHVIGEDDQFIGKKAAYALSQGLKVIACIGELLQEREAGK 139

Query: 79  TVAVVAAQTKAIADKISNWANVVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLSENVSA 138
           T  V   Q KA AD + +W +VV+AYEPVWAIGTGKVATP QAQEVH  +R WL +NVSA
Sbjct: 140 TFDVCFQQMKAFADAVPSWDDVVIAYEPVWAIGTGKVATPLQAQEVHIAVRDWLKKNVSA 199

Query: 139 EVAASTRIIYGGN 151
           EVA+ TRIIYGG+
Sbjct: 200 EVASKTRIIYGGS 212