Jatropha Genome Database

JcCB0198891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0198891.10 + phase: 0 
         (232 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003975001 assembled CDS                                       293   7e-80
GSVIVT01005872001 assembled CDS                                       134   3e-32
GSVIVT01005873001 assembled CDS                                       109   1e-24

>GSVIVT01003975001 assembled CDS
          Length = 328

 Score =  293 bits (749), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 137/145 (94%), Positives = 140/145 (96%)

Query: 81  MVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACLTKIPSGNSSTITPLPH 140
           MVLDALIKIKNE+DPTLTFRRSCREGICGSCAMNIDGCNGLACLTKIPSG SST+TPLPH
Sbjct: 1   MVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIDGCNGLACLTKIPSGESSTVTPLPH 60

Query: 141 MYVIKDLVVDMTNFYNQYKSIEPWLKRKNPPQVPGKEILQSKKDRAKLDGMYECILCACC 200
           M+VIKDLVVDMTNFYNQYKSIEPWLKRK PP  PGKEI QSKKDRAKLDGMYECILCACC
Sbjct: 61  MFVIKDLVVDMTNFYNQYKSIEPWLKRKTPPPTPGKEIPQSKKDRAKLDGMYECILCACC 120

Query: 201 STSCPSYWWNPESYLGPAALLHANR 225
           STSCPSYWWNPESYLGPAALLHANR
Sbjct: 121 STSCPSYWWNPESYLGPAALLHANR 145


>GSVIVT01005872001 assembled CDS
          Length = 158

 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/131 (56%), Positives = 85/131 (64%), Gaps = 9/131 (6%)

Query: 22  TARFVPARFH--ASEAEAQKVEPKATSSTNL----KTFQIYRWNPDNP-AKPQLQDYQID 74
           T RF     H  A E     VE + T   NL    K FQIYRWNPD P  KP LQ Y +D
Sbjct: 24  TKRFPVLEGHPLAQEHAEAAVETQGTIQENLNALKKEFQIYRWNPDFPNTKPHLQSYFVD 83

Query: 75  LKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACLTKIPSGNS-- 132
           L  CGPMVLDAL KIK E D +L++RRSCREGICGSCAMNIDG N +ACL  I +  +  
Sbjct: 84  LSTCGPMVLDALQKIKAEEDSSLSYRRSCREGICGSCAMNIDGTNTVACLRPIDADTTKP 143

Query: 133 STITPLPHMYV 143
           +TITPLPH+ +
Sbjct: 144 TTITPLPHISI 154


>GSVIVT01005873001 assembled CDS
          Length = 141

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/69 (72%), Positives = 57/69 (82%), Gaps = 1/69 (1%)

Query: 158 YKSIEPWLKRKNPPQVPGKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGP 217
           Y+SIEPWLK +  P+  G+E  QS KDR KLDG+YECILCACCSTSCPSYWWNPE + GP
Sbjct: 9   YRSIEPWLKARQRPE-DGREYRQSPKDRKKLDGLYECILCACCSTSCPSYWWNPEEFPGP 67

Query: 218 AALLHANRY 226
           AALLHA R+
Sbjct: 68  AALLHAYRW 76