Jatropha Genome Database

JcCB0198751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0198751.10 + phase: 1 /partial
         (578 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007958001 assembled CDS                                       480   e-136
GSVIVT01035957001 assembled CDS                                       374   e-104
GSVIVT01022808001 assembled CDS                                       328   4e-90
GSVIVT01003875001 assembled CDS                                       319   2e-87

>GSVIVT01007958001 assembled CDS
          Length = 1010

 Score =  480 bits (1235), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 224/287 (78%), Positives = 245/287 (85%), Gaps = 2/287 (0%)

Query: 1   GDRRSQISDILSQYDMTVMDYPRQYEGCPMLPLEMIHHFLRSSESWLSLEGQQNVLLMHC 60
           GDRRSQISDILSQYDMTVMDYPRQYEGCP+LPLEMIHHFLRSSESWLSLEGQQNVLLMHC
Sbjct: 68  GDRRSQISDILSQYDMTVMDYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHC 127

Query: 61  ERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKEXXXXXXXXXXXXXXXRYLQYI 120
           ERGGWPVLAFMLAGLLLYRKQY+GEQ+TLEMVYKQAP+E               RYLQYI
Sbjct: 128 ERGGWPVLAFMLAGLLLYRKQYNGEQRTLEMVYKQAPRELLHLLSPLNPQPSQLRYLQYI 187

Query: 121 SRRNFGSEWPPSDTPLVLDCLMLRALPIFGGGKGCRPVVRVYGQDARKPANRTSKLLFST 180
           SRRNFGS+WPPSDTPL LD L+LR LP+F GG+GCRPVVRVYGQDA   ANR+SKLLFST
Sbjct: 188 SRRNFGSDWPPSDTPLKLDYLILRILPLFNGGRGCRPVVRVYGQDASAMANRSSKLLFST 247

Query: 181 SKAKKHLRHYSQDECLLVKIDIRCRIQGDVVLECIHLDEDLVHEEMIFRIMFHTAFVRAN 240
           SK KKH+RHY Q EC +VKI I CR+QGDVVLECIHLDEDLV EEM+FR+MFHTAFVR+N
Sbjct: 248 SKTKKHVRHYQQAECTVVKIGIHCRVQGDVVLECIHLDEDLVREEMMFRVMFHTAFVRSN 307

Query: 241 ILILCRDEIDILWDAKDQFPKEFKAEAVDMLSNNAIKEV-TEDASGE 286
           ILIL RDEID+LWD KDQFPK+FKAE +     NAI  + T + +GE
Sbjct: 308 ILILNRDEIDVLWDVKDQFPKDFKAEVL-FSDANAIGSICTTEIAGE 353



 Score =  107 bits (266), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 1/113 (0%)

Query: 306 SKLPHIKLSVDHGRQKVEKVVPPSPKRQPTSNTKPVVADSAAVKQKIKQLEPLGTNGKQA 365
           +++P  KL+ D GRQK +K++PP+P++QP S  KP  A+S   KQK+KQ EP     K  
Sbjct: 439 NRVPQQKLNADSGRQKSDKLLPPAPRKQPASTAKPPAAESVIAKQKVKQQEPQSAAAKPT 498

Query: 366 RPS-TVPRWITPNKAPFANSMHVAHPPSRYNXXXXXXXXXXXXKDSNADSHVK 417
           +    V RWI PNK  + NSMH+++PPSRYN            KDSNAD +++
Sbjct: 499 KQKPLVSRWIPPNKGSYTNSMHISYPPSRYNSAPAALVITALSKDSNADGNLE 551


>GSVIVT01035957001 assembled CDS
          Length = 1642

 Score =  374 bits (959), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/287 (65%), Positives = 226/287 (78%), Gaps = 5/287 (1%)

Query: 1   GDRRSQISDILSQYDMTVMDYPRQYEGCPMLPLEMIHHFLRSSESWLSLEGQQNVLLMHC 60
           GD +SQIS ILS+YDMTVMDYPR YEGCP+L +EMIHHFLRSSESWLSL GQQNVLLMHC
Sbjct: 76  GDSQSQISSILSEYDMTVMDYPRHYEGCPLLTMEMIHHFLRSSESWLSL-GQQNVLLMHC 134

Query: 61  ERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKEXXXXXXXXXXXXXXXRYLQYI 120
           ER GWP+LAFMLA LL+YRKQY+GEQKTL+M+YKQAP+E               RYLQY+
Sbjct: 135 ERSGWPILAFMLAALLIYRKQYTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYV 194

Query: 121 SRRNFGSEWPPSDTPLVLDCLMLRALPIFGGGKGCRPVVRVYGQDARKPANRTSKLLFST 180
           SRRN GSEWPP D  L LDC++LR +P   G  GCRP+ R+YGQD    A+RT K+LFST
Sbjct: 195 SRRNVGSEWPPLDRALTLDCVILRIIPNLDGEGGCRPIFRIYGQDPFMVADRTPKVLFST 254

Query: 181 SKAKKHLRHYSQDECLLVKIDIRCRIQGDVVLECIHLDEDLVHEEMIFRIMFHTAFVRAN 240
            K  K +RHY Q++C LVKIDI C IQGDVVLECI L+ED+  EEM+FR+MF+TAF+R+N
Sbjct: 255 PKRSKTVRHYKQEDCELVKIDIHCHIQGDVVLECISLEEDMEREEMMFRVMFNTAFIRSN 314

Query: 241 ILILCRDEIDILWDAKDQFPKEFKAEAV--DMLSNNAIKEVTEDASG 285
           IL+L RDEIDILW++KDQFPK+F+AE +  +M S N++  +T D  G
Sbjct: 315 ILMLNRDEIDILWNSKDQFPKDFRAEVLFSEMDSGNSL--ITIDLEG 359


>GSVIVT01022808001 assembled CDS
          Length = 1082

 Score =  328 bits (841), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 149/288 (51%), Positives = 212/288 (73%), Gaps = 2/288 (0%)

Query: 1   GDRRSQISDILSQYDMTVMDYPRQYEGCPMLPLEMIHHFLRSSESWLSLEGQQNVLLMHC 60
           G++RSQ ++IL +YD+TV+DYPRQYEGCP+LPL +I HFLR   SWLSL  QQN++L+HC
Sbjct: 68  GEKRSQFAEILCEYDVTVLDYPRQYEGCPLLPLSLIQHFLRVCGSWLSLGSQQNIILLHC 127

Query: 61  ERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKEXXXXXXXXXXXXXXXRYLQYI 120
           ERGGWP+LA +LA  L++RK +SGE+KTLE+V+++APK                RYLQY+
Sbjct: 128 ERGGWPLLALLLASFLIFRKLHSGERKTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYV 187

Query: 121 SRRNFGSEWPPSDTPLVLDCLMLRALPIFGGGKGCRPVVRVYGQDARKPANRTSKLLFST 180
           +RRN   EWPP +  L LDC+ LRA+P F    GCRP++R++G++       ++++LFS 
Sbjct: 188 ARRNISPEWPPPERALSLDCVFLRAIPSFDSQNGCRPIIRIFGRNLHSKGGLSTQMLFSM 247

Query: 181 SKAKKHLRHYSQDECLLVKIDIRCRIQGDVVLECIHLDEDLVHEEMIFRIMFHTAFVRAN 240
           SK +K +RHY Q +C ++KIDI+C +QGDVVLEC+HLD D   E M+FR+MF+TAF+R+N
Sbjct: 248 SKKRKTIRHYCQADCDVIKIDIQCMVQGDVVLECVHLDVDSEREVMMFRVMFNTAFIRSN 307

Query: 241 ILILCRDEIDILWDAKDQFPKEFKAEAV--DMLSNNAIKEVTEDASGE 286
           IL+L  + +DILWD+K+++PK F+AE +  D+ S +  +  TE  +GE
Sbjct: 308 ILMLNCENLDILWDSKERYPKGFRAEVLFGDVESISPSRAPTEILNGE 355


>GSVIVT01003875001 assembled CDS
          Length = 947

 Score =  319 bits (818), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 150/241 (62%), Positives = 181/241 (75%), Gaps = 1/241 (0%)

Query: 44  ESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKEXXXX 103
           ++WLSL G  N+LLMHCERGGWP+LAFMLA LL+YRK Y+GEQKTLEM+YKQ+P E    
Sbjct: 57  DAWLSL-GPNNLLLMHCERGGWPILAFMLAALLIYRKHYTGEQKTLEMIYKQSPCELLQC 115

Query: 104 XXXXXXXXXXXRYLQYISRRNFGSEWPPSDTPLVLDCLMLRALPIFGGGKGCRPVVRVYG 163
                      RYLQYISRRN  SEWPP D  L LDC+++R +P F G  GCRP+ R+YG
Sbjct: 116 LSPLNPVPSQTRYLQYISRRNMASEWPPLDRALTLDCVIIRLVPDFDGEGGCRPIFRIYG 175

Query: 164 QDARKPANRTSKLLFSTSKAKKHLRHYSQDECLLVKIDIRCRIQGDVVLECIHLDEDLVH 223
           QD    A+RT KLLFST K  K +RHY Q+EC LVKIDI C IQGDVVLECI+L++D  +
Sbjct: 176 QDPFLVADRTPKLLFSTPKKSKTIRHYKQEECELVKIDINCHIQGDVVLECINLNDDTEY 235

Query: 224 EEMIFRIMFHTAFVRANILILCRDEIDILWDAKDQFPKEFKAEAVDMLSNNAIKEVTEDA 283
           EEMIFR+MF+TAF+R+NIL+L RDEIDILW+AKDQFPK+F+AE +    + A   VT D 
Sbjct: 236 EEMIFRLMFNTAFIRSNILMLNRDEIDILWNAKDQFPKDFRAEVLFSDMDAAASVVTVDL 295

Query: 284 S 284
           S
Sbjct: 296 S 296