Jatropha Genome Database

JcCB0198581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0198581.10 - phase: 0 /partial
         (82 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014524001 assembled CDS                                        78   8e-16
GSVIVT01014529001 assembled CDS                                        77   2e-15
GSVIVT01014520001 assembled CDS                                        74   1e-14
GSVIVT01014500001 assembled CDS                                        70   2e-13
GSVIVT01014532001 assembled CDS                                        68   9e-13
GSVIVT01034405001 assembled CDS                                        67   2e-12
GSVIVT01006478001 assembled CDS                                        67   2e-12
GSVIVT01014328001 assembled CDS                                        67   2e-12
GSVIVT01014490001 assembled CDS                                        66   3e-12
GSVIVT01020562001 assembled CDS                                        62   6e-11
GSVIVT01003682001 assembled CDS                                        60   2e-10
GSVIVT01000445001 assembled CDS                                        59   3e-10
GSVIVT01014474001 assembled CDS                                        59   5e-10
GSVIVT01000425001 assembled CDS                                        57   2e-09
GSVIVT01014481001 assembled CDS                                        56   3e-09
GSVIVT01006351001 assembled CDS                                        55   9e-09
GSVIVT01005714001 assembled CDS                                        50   2e-07
GSVIVT01000437001 assembled CDS                                        48   7e-07
GSVIVT01027003001 assembled CDS                                        47   2e-06

>GSVIVT01014524001 assembled CDS
          Length = 475

 Score = 77.8 bits (190), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 50/73 (68%)

Query: 10 ALSFILVITNLLFLFCKFSNATDTLTSSQSIVDGQTLVSKDGIFELGFFSPGSSGKRYLG 69
          AL+ ++ I + +F   + S A DT+  +Q I DG+T+ S  G F+LGFFSPG S  RYLG
Sbjct: 3  ALATVVFIFSYVFSLLRISTAVDTINVNQHIRDGETITSAGGTFQLGFFSPGDSKNRYLG 62

Query: 70 IWYQKIPVRTVVW 82
          IWY+K+  +TVVW
Sbjct: 63 IWYKKVAPQTVVW 75


>GSVIVT01014529001 assembled CDS
          Length = 818

 Score = 76.6 bits (187), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 50/73 (68%)

Query: 10 ALSFILVITNLLFLFCKFSNATDTLTSSQSIVDGQTLVSKDGIFELGFFSPGSSGKRYLG 69
          +L+ + VI + +    + S A DT+  +Q+I DG+T+ S  G FELGFFSPG+S  RYLG
Sbjct: 3  SLTTVAVIFSYVLSLLRISVAVDTIIVNQNITDGETITSAGGSFELGFFSPGNSKNRYLG 62

Query: 70 IWYQKIPVRTVVW 82
          IWY+K+   TVVW
Sbjct: 63 IWYKKVATGTVVW 75


>GSVIVT01014520001 assembled CDS
          Length = 817

 Score = 73.9 bits (180), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 49/73 (67%)

Query: 10 ALSFILVITNLLFLFCKFSNATDTLTSSQSIVDGQTLVSKDGIFELGFFSPGSSGKRYLG 69
          +L+ + VI + +    + S A DT+  +Q+I DG+T+ S  G FELGFFSPG+S  RYLG
Sbjct: 3  SLTTVAVIFSYVLSLLRISVAVDTIIVNQNITDGETITSAGGSFELGFFSPGNSKNRYLG 62

Query: 70 IWYQKIPVRTVVW 82
          IWY+K   + VVW
Sbjct: 63 IWYKKASKKPVVW 75


>GSVIVT01014500001 assembled CDS
          Length = 1901

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 50/73 (68%)

Query: 10 ALSFILVITNLLFLFCKFSNATDTLTSSQSIVDGQTLVSKDGIFELGFFSPGSSGKRYLG 69
          AL+ +++I + +      S A DT+T +Q I  G+T++S  G FELGF++P +S  +YLG
Sbjct: 3  ALARLVIIFSSVLFIVPISIAVDTITVNQPIRYGETIISAGGSFELGFYTPENSKNQYLG 62

Query: 70 IWYQKIPVRTVVW 82
          IWY+K+  RTVVW
Sbjct: 63 IWYKKVTPRTVVW 75


>GSVIVT01014532001 assembled CDS
          Length = 454

 Score = 67.8 bits (164), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 38/53 (71%)

Query: 30 ATDTLTSSQSIVDGQTLVSKDGIFELGFFSPGSSGKRYLGIWYQKIPVRTVVW 82
          A DT+  +Q I DG+T+ S  G FELGFF+PG+S  RYLGIWY+K   + VVW
Sbjct: 2  ALDTIIVNQPITDGETITSAGGSFELGFFNPGNSKNRYLGIWYKKASKKPVVW 54


>GSVIVT01034405001 assembled CDS
          Length = 398

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 38/51 (74%)

Query: 32 DTLTSSQSIVDGQTLVSKDGIFELGFFSPGSSGKRYLGIWYQKIPVRTVVW 82
          DT++  QSI   QT++S  G FELGFFSPG+S K Y+GIWY+K+   T+VW
Sbjct: 26 DTISQGQSITTSQTIISAGGEFELGFFSPGNSTKYYVGIWYKKVSEPTIVW 76



 Score = 57.4 bits (137), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 34/51 (66%)

Query: 32  DTLTSSQSIVDGQTLVSKDGIFELGFFSPGSSGKRYLGIWYQKIPVRTVVW 82
           DT+   QS+    T++   G FELGFFSP  S K Y+GIWY+KI  +T+VW
Sbjct: 309 DTILQGQSLTTSHTIIFVAGNFELGFFSPRKSTKYYVGIWYKKISKQTIVW 359


>GSVIVT01006478001 assembled CDS
          Length = 1229

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 42/63 (66%)

Query: 20  LLFLFCKFSNATDTLTSSQSIVDGQTLVSKDGIFELGFFSPGSSGKRYLGIWYQKIPVRT 79
           +LFL     ++TDT+T +Q   DG  LVSK+  F LGFFSP +S  RY+G+WY  I  +T
Sbjct: 602 ILFLMLPLCSSTDTITPNQPFRDGDLLVSKESRFALGFFSPRNSTLRYIGVWYNTIREQT 661

Query: 80  VVW 82
           VVW
Sbjct: 662 VVW 664


>GSVIVT01014328001 assembled CDS
          Length = 751

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 43/72 (59%), Gaps = 2/72 (2%)

Query: 13 FILVITNLLFL--FCKFSNATDTLTSSQSIVDGQTLVSKDGIFELGFFSPGSSGKRYLGI 70
          F L +  L FL  +   S   DT+   Q I   QT+ S+D  FELGFF P +S   Y+GI
Sbjct: 10 FFLHVLVLFFLSFYMHLSIGVDTIFPGQPISGNQTITSQDERFELGFFKPNNSQNYYIGI 69

Query: 71 WYQKIPVRTVVW 82
          WY+K+PV TVVW
Sbjct: 70 WYKKVPVHTVVW 81


>GSVIVT01014490001 assembled CDS
          Length = 607

 Score = 66.2 bits (160), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 38/51 (74%)

Query: 32  DTLTSSQSIVDGQTLVSKDGIFELGFFSPGSSGKRYLGIWYQKIPVRTVVW 82
           DT+   QS++  QT++S  G FELGFFSPG S K Y+GIWY+KI  +T+VW
Sbjct: 60  DTILQGQSLITSQTIISAGGNFELGFFSPGKSTKYYVGIWYKKISEQTIVW 110


>GSVIVT01020562001 assembled CDS
          Length = 425

 Score = 62.0 bits (149), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 1/54 (1%)

Query: 30 ATDTLTSSQSIVDGQTLVSKDG-IFELGFFSPGSSGKRYLGIWYQKIPVRTVVW 82
           +DT+   QS+   QT+ S DG  FELGFF+PG+S   Y+GIWY ++P +TVVW
Sbjct: 24 GSDTIFPGQSLSGNQTIRSDDGGTFELGFFTPGNSRNYYIGIWYGRLPTKTVVW 77


>GSVIVT01003682001 assembled CDS
          Length = 238

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 3/76 (3%)

Query: 7  LICALSFILVITNLLFLFCKFSNATDTLTSSQSIVDGQTLVSKDGIFELGFFSPGSSGKR 66
          L   ++ +L+++ + F FC    A DT+TS++ I D +TLVS    F+LGFFS   S  R
Sbjct: 6  LKSVIALLLLLSVVCFGFCT---AIDTMTSTRFIEDPETLVSNGSAFKLGFFSLADSTNR 62

Query: 67 YLGIWYQKIPVRTVVW 82
          Y+GIWY    + TV+W
Sbjct: 63 YVGIWYSTPSLSTVIW 78


>GSVIVT01000445001 assembled CDS
          Length = 638

 Score = 59.3 bits (142), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 41/62 (66%)

Query: 21  LFLFCKFSNATDTLTSSQSIVDGQTLVSKDGIFELGFFSPGSSGKRYLGIWYQKIPVRTV 80
           L L    S+  DT++ ++++   QTLVS  G F LGFF PG+S   Y+G+WY+K+  +T+
Sbjct: 82  LTLKIHLSHGGDTISGNETLSGDQTLVSAGGNFVLGFFKPGNSSYYYIGMWYKKVSEQTI 141

Query: 81  VW 82
           VW
Sbjct: 142 VW 143


>GSVIVT01014474001 assembled CDS
          Length = 75

 Score = 58.9 bits (141), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/47 (55%), Positives = 34/47 (72%)

Query: 36 SSQSIVDGQTLVSKDGIFELGFFSPGSSGKRYLGIWYQKIPVRTVVW 82
          +SQS+   QT +S  G FELGFFSPG + K ++ IWY+KI  RT+VW
Sbjct: 8  TSQSLTTSQTFISAAGDFELGFFSPGKAAKYFVEIWYKKILERTIVW 54


>GSVIVT01000425001 assembled CDS
          Length = 1004

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 4/82 (4%)

Query: 5   SKLICALSFILVITNLLFLFCKFSNATDTLTSSQSIVDG--QTLVSKDGIFELGFFSPG- 61
           S  I  +S I ++  +L    +   A DT+  +  I DG  +TL+S    FELGFF+P  
Sbjct: 65  STTIHMVSTIFILYPILLCCYQTCAARDTIRQNDPISDGDGETLLSAGKTFELGFFTPNG 124

Query: 62  -SSGKRYLGIWYQKIPVRTVVW 82
            SS +RY+GIWY ++  +TVVW
Sbjct: 125 SSSHQRYVGIWYYRLEPKTVVW 146


>GSVIVT01014481001 assembled CDS
          Length = 594

 Score = 56.2 bits (134), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 4/55 (7%)

Query: 32 DTLTSSQSIVDGQTLVSKDGIFELGFFSPGSSGKRYLGIWYQKI----PVRTVVW 82
          DT+   QSI   QT++S  G FELGFF PG+S   Y+GIWY+KI      +T+ W
Sbjct: 26 DTILQGQSITTSQTIISAAGNFELGFFKPGNSTNYYVGIWYKKISDQVSDKTIAW 80


>GSVIVT01006351001 assembled CDS
          Length = 817

 Score = 54.7 bits (130), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 15 LVITNLLFLFCKFSNATDTLTSSQSIVDGQTLVSKDGIFELGFFSPGSSGKRYLGIWYQK 74
          L++T   F+F    +A DT+TS+  I D +T+VS   +F+LGFFS   S  RY+GIWY  
Sbjct: 11 LLLTCFWFVFG--CSAIDTITSTHFIKDPETIVSSGRVFKLGFFSLDGSSNRYVGIWYNT 68

Query: 75 IPVRTVVW 82
            + T++W
Sbjct: 69 TSLLTIIW 76


>GSVIVT01005714001 assembled CDS
          Length = 1203

 Score = 49.7 bits (117), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 27/40 (67%)

Query: 43  GQTLVSKDGIFELGFFSPGSSGKRYLGIWYQKIPVRTVVW 82
           G  LVSK   F LGFFSP +S  RY+G+WY  I  +TVVW
Sbjct: 447 GDLLVSKQSRFALGFFSPRNSTLRYIGVWYNTIREQTVVW 486


>GSVIVT01000437001 assembled CDS
          Length = 1130

 Score = 48.1 bits (113), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 20  LLFLFCKF--SNATDTLTSSQSIVDGQ--TLVSKDGIFELGFFSP--GSSGKRYLGIWYQ 73
           + F  C     +A DT+T +  + D    TLVS +  FELGFF P  G +  +Y+GIWY 
Sbjct: 449 IFFFLCSILCCSARDTITPNNLLFDDGRGTLVSANQTFELGFFIPKGGFNNGKYIGIWYY 508

Query: 74  KIPVRTVVW 82
            +  RTVVW
Sbjct: 509 GLKERTVVW 517


>GSVIVT01027003001 assembled CDS
          Length = 950

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/43 (44%), Positives = 27/43 (62%)

Query: 40 IVDGQTLVSKDGIFELGFFSPGSSGKRYLGIWYQKIPVRTVVW 82
          I   +T++S++G F++GFFS       YLGIWY  +P  T VW
Sbjct: 26 ITGNKTILSENGTFKMGFFSANGGPNWYLGIWYASLPTPTYVW 68