Jatropha Genome Database

JcCB0198191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0198191.10 + phase: 0 
         (300 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020110001 assembled CDS                                       383   e-107
GSVIVT01012219001 assembled CDS                                       200   6e-52
GSVIVT01006040001 assembled CDS                                       192   2e-49
GSVIVT01017668001 assembled CDS                                       115   3e-26
GSVIVT01012680001 assembled CDS                                       102   3e-22
GSVIVT01007721001 assembled CDS                                        75   4e-14
GSVIVT01021673001 assembled CDS                                        54   1e-07
GSVIVT01016475001 assembled CDS                                        50   2e-06

>GSVIVT01020110001 assembled CDS
          Length = 369

 Score =  383 bits (984), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/295 (64%), Positives = 232/295 (78%), Gaps = 8/295 (2%)

Query: 11  YIEMKLINKHSYITLLSFISFIITLPSPISSQACKNSCGNIPIKYPFGTGLGCGDPRFQK 70
           ++ +++  K   IT L  IS I+ LP+ I SQ+C+ +CGN  +KYPFG+G GCGDPRFQ 
Sbjct: 65  HLSLRMKPKCLSITFLC-ISLIL-LPTLILSQSCQRTCGNQHLKYPFGSGPGCGDPRFQP 122

Query: 71  YVTCDDQEKLSLLTHTGCYPINNIDYTNQVIYISDPSMSTCSCTQPSKGFGLDWDAPFSF 130
           YVTC  QEKL+ +THTG Y I NIDY +QV+ I+DPSMSTCSC QPSKGFGLDW+APFSF
Sbjct: 123 YVTCS-QEKLTFITHTGYYTITNIDYNSQVLCITDPSMSTCSCAQPSKGFGLDWNAPFSF 181

Query: 131 QDDTVFTLLDCSTTSSPIFR-----NSNNGSIVPQCDRTGAPICSFLYSCQAISRLSLPI 185
            D  VF LLDCS TSSPI++        N ++VP CD  GAPICS LYSC+ I  L++PI
Sbjct: 182 HDGNVFALLDCSITSSPIYKPDGLYGGGNSTLVPLCDSEGAPICSLLYSCRPIIVLNIPI 241

Query: 186 STCCVYTPVDLGPAFEMDLQKLQCSSYSGFYSFNGQEDNPENWKYGIALKYKFNVYNDYP 245
           STCCVYTPVDLGP+FEMDLQKL+C+SYSGFYS+NGQ+ NP++WKYG+ALKYKF++ NDYP
Sbjct: 242 STCCVYTPVDLGPSFEMDLQKLKCTSYSGFYSYNGQDSNPQSWKYGVALKYKFSINNDYP 301

Query: 246 SSCANCERSNGVCGYGGVYNSFVCNCPNGFNTTSDCFFGGSYSLGSTLLPWQTGI 300
            +CA+CE+SNGVCGY G YNSF+CNCP G NTT +CFF   ++ G   LPWQTGI
Sbjct: 302 GACADCEKSNGVCGYTGDYNSFICNCPGGVNTTGNCFFSAYWNNGLRPLPWQTGI 356


>GSVIVT01012219001 assembled CDS
          Length = 967

 Score =  200 bits (509), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 112/258 (43%), Positives = 152/258 (58%), Gaps = 18/258 (6%)

Query: 44  CKNSCGNIPIKYPFGTGLGCGDPRFQKYVTCDDQEKLSLLTHTGCYPINNIDYTNQVIYI 103
           C + CGNI +K+PFGTG GCG P F +YV C     L   T TG Y + +IDY++  I +
Sbjct: 702 CSDVCGNITVKFPFGTGFGCGHPDFARYVKCSSG-TLQFSTLTGIYTVASIDYSSSTIIV 760

Query: 104 SDPSMSTCSCTQPSKGFGLDWDAPFSFQDDTVFTLLDCSTTSSPIFRNSNNGSIVPQCDR 163
           +DP MSTC+  Q S  F LD  +PF+   D VF LL CSTT SP+F  + +      CD 
Sbjct: 761 NDPLMSTCTSMQNSGSFSLDRASPFTIMADDVFVLLGCSTT-SPVFDLNED-----LCDT 814

Query: 164 -TGAPICSFLYSCQAISRLSL----PISTCCVYTPVD-LGPAFEMDLQKLQCSSYSGFYS 217
            +G+  C  LYSC+ ++ + L    P STCCVY  +D +G  + +DL KLQCSSY+  Y 
Sbjct: 815 GSGSHACRGLYSCKGVTGIGLDPNAPTSTCCVYNSLDGVGSGYGLDLPKLQCSSYASIYG 874

Query: 218 FNGQEDNPENWKYGIALKYKFNVYNDYPSSCANCERSNGVCGYGGVYNSFVCNCPNGFNT 277
               E +P  WK+GI+L+Y     +    +C +CE S G+CG+ G+  SF C C NG NT
Sbjct: 875 LGDDEGDPMKWKFGISLQYN----SSDSDACKDCEASGGLCGFTGLDESFACICQNGVNT 930

Query: 278 TSDCFFGGSYSLGSTLLP 295
           T++C FG  Y+   T  P
Sbjct: 931 TTNC-FGRGYAWSGTWGP 947


>GSVIVT01006040001 assembled CDS
          Length = 300

 Score =  192 bits (487), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 104/269 (38%), Positives = 155/269 (57%), Gaps = 29/269 (10%)

Query: 40  SSQACKNSCGNIPIKYPFGTGLGCGDPRFQKYVTC----DDQEKLSLLTHTGCYPINNID 95
           S  AC+++CG++ +K+PFGTG+GCG PRFQ Y++C    D  ++L L THTG YPI +I 
Sbjct: 25  SDPACRDTCGSLSVKFPFGTGVGCGSPRFQPYISCSQSSDGGDQLLLRTHTGVYPITSIS 84

Query: 96  YTNQVIYISDPSMSTCSCTQPSKGFGLDWDAPFSFQDDTVFTLLDC----STTSSPIFRN 151
           Y      ++ P MS C+  QPS   GLDW +PF     + F LL C    ++ +SP    
Sbjct: 85  YEAAAFTVTPPLMSNCTSMQPSPNLGLDWASPFQL-GPSAFILLSCPPSLTSKASP---- 139

Query: 152 SNNGSIVPQCDRTGAPICSFLYSCQAISRLSLPI----STCCVYTPVDLGPAFEMDLQKL 207
                  P CD + + +C+ +Y+C ++  L LP+    ++CCVY+P +     E+DL  L
Sbjct: 140 -------PICDPSLSHLCASIYTCPSVVSLGLPLFPPTNSCCVYSPANFNTKGELDLHAL 192

Query: 208 QCSSYSGFYSFNGQEDNPENWKYGIALKYKFNVYNDY--PSSCANCERSNGVCGYGGVYN 265
           +C++Y+   +      +P  W+YG+  KY    +++Y   + C  C+ S GVCGY    N
Sbjct: 193 KCAAYASVVTLGDYPTDPTRWEYGVVFKYTQGKFDNYGMDTKCYACDSSGGVCGYAPPSN 252

Query: 266 SFVCNCPNGFNTTSDC---FFGGSYSLGS 291
           SFVC C NGFNT+S+C    F G +S GS
Sbjct: 253 SFVCVCGNGFNTSSNCNGYSFAGIWSSGS 281


>GSVIVT01017668001 assembled CDS
          Length = 293

 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 120/261 (45%), Gaps = 24/261 (9%)

Query: 38  PISSQACKNSCGNIPIKYPFGTGLGCGDPRFQKYVTCDDQEKLSLLTHTGCYPINNIDYT 97
           P  S  C++ CG IP+KYPFG   GCG P+++  + C     L  LT +G Y +  IDY 
Sbjct: 25  PAVSLPCRSFCGTIPVKYPFGVDEGCGAPQYKGMLNC--STDLFFLTPSGNYKVQAIDYD 82

Query: 98  NQVIYISDPSMSTCSCTQPSKGFGLD--WDAPFSFQDDTVFTLLDCSTTSSPIFRNSNNG 155
            + + + DP+MSTCS  QP   F +     A      DTVF LL+CS   SP+  +  + 
Sbjct: 83  KKTMVVYDPAMSTCSILQPHHDFLMSDIQSAMIPPASDTVFVLLNCS-IDSPVLNHYKS- 140

Query: 156 SIVPQCDRTGAPICSFLYSCQAISRLSLPISTC---CVYTPVDLGPAFEMDLQKLQCSSY 212
                C       C  LYS     +L   +S     C +T  D      M++  L CS Y
Sbjct: 141 ----LCFNFSGHSCDELYSACTSFKLFHLLSNSSPPCCFTGYDTVKYMSMNI--LDCSHY 194

Query: 213 SGFYSFNGQED-NPENWKYGIALKYKFNVYNDYPSSCANCERSNGVCGYGGVYNSFVCNC 271
           +  Y  +G +   P +W YGI L Y         + C  C RS G CG+       +C C
Sbjct: 195 TSVYDTDGLKGIGPLDWSYGIKLSYAIP-----DTGCERCTRSGGTCGFDTQTEGTLCIC 249

Query: 272 PNGFNTTSDCFFGGSYSLGST 292
            +  N+T +C  G   SL ST
Sbjct: 250 SSSTNSTRECAGG---SLAST 267


>GSVIVT01012680001 assembled CDS
          Length = 339

 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 123/275 (44%), Gaps = 26/275 (9%)

Query: 20  HSYITLLSFISFIITLPSPISSQACKNSCGNIPIKYPFGTGLGCGDPRFQKYVTCDDQEK 79
           H +  +L+ + F     +   +  C+ SCG IPI YPFG   GCG P ++  + C D  +
Sbjct: 21  HLFFLILTPLIFPFLTLTAAQASLCRTSCGGIPINYPFGIDDGCGSPYYRHILVCPDSGQ 80

Query: 80  LSLLTHTGCYPINNIDYTNQVIYISDPSMSTCS---CTQPSKGFGLDWDAPFSFQDDTVF 136
           L L T +G YP+ ++ Y++  I +SDP M  C      +P++ F LD    FS      +
Sbjct: 81  LELRTPSGRYPVRSLSYSDPHILVSDPFMWNCQDGDAFRPTRPFSLDTSTHFSLSPQNDY 140

Query: 137 TLLDCS-----TTSSPIFRNSNNGSIVPQCDRTGAPICSFLYSCQAISRLSLPISTCCVY 191
              +CS         PIF           CD + + +C  L  C +    +L  S+CC Y
Sbjct: 141 LFFNCSEDDVIVEPKPIFCERFPDRCDSSCD-SASYLCRHLPECAS----ALGGSSCCSY 195

Query: 192 TPVDLGPAFEMDLQKLQCSSYSGFYSFNGQEDNPENW--KYGIALKYKFNVYNDYPSSCA 249
            P        + L    C+SY+  Y  +   + P++   +YG+ + +   V     + C 
Sbjct: 196 YP---KATESLRLMLKYCASYTSVYWRSSGGNPPDDQIPEYGVRVDFDIPV----TTRCL 248

Query: 250 NCE---RSNGVCGYGGVYNSFVCNCPNGFNTTSDC 281
            C+   +  G CG+      F+C C  G NTT+ C
Sbjct: 249 QCQDTTKGGGTCGFDTQTQDFLCLCEQG-NTTTYC 282


>GSVIVT01007721001 assembled CDS
          Length = 242

 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 95/216 (43%), Gaps = 38/216 (17%)

Query: 86  TGCYPINNIDYTNQVIYISDPSMSTC-SCTQPSKGFGL---DWDAPF-SFQDDTVFTLLD 140
           +G Y + +IDY  Q + + DP MSTC S     KG G     W AP+ +   D VF LL 
Sbjct: 11  SGSYRVLDIDYAYQALTLDDPHMSTCESIVLGGKGNGFAIEHWRAPYLNPAADNVFMLLG 70

Query: 141 CSTTSSPIFRNSNNGSIVPQCDRTGAPICSFLYSCQAISRLSLPISTCCVYTPVDLGPA- 199
           CS   SP+F+   +  +   C       C   Y C A            V+ P  LG   
Sbjct: 71  CS-AQSPLFQGFPSKHL--PCRNVSGMGCEEYYWCSAWG----------VFGPKKLGSGT 117

Query: 200 ---------FE----MDLQKLQCSSYSGFYSFNG-QEDNPENWKYGIALKYKFNVYNDYP 245
                    FE    ++L +L+C  YS  YS    +E  P  W YGI ++Y     N++ 
Sbjct: 118 GPPECCAVPFEAIKAINLTRLECEGYSSAYSLAPLREIGPGGWSYGIRVRYSVQG-NEF- 175

Query: 246 SSCANCERSNGVCGYGGVYNSFVCNCPNGFNTTSDC 281
             C  CE + G CGYG      +C C +  N+TS+C
Sbjct: 176 --CRACEATGGACGYGSDGVRELCLCGSS-NSTSNC 208


>GSVIVT01021673001 assembled CDS
          Length = 702

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 16/115 (13%)

Query: 8   LPLYIEMKLINKHSYITLLSFISFIITLPSPISSQA---CKNSCGNIPIKYPFGTGLGC- 63
           +P  + M++I   ++  L+S IS + +L    +S A   C  +CGN+ I YPFG G GC 
Sbjct: 16  IPRKMVMQMIQVLAFTILISIISLLFSLKETAASMAKPGCPETCGNVSIVYPFGIGKGCY 75

Query: 64  GDPRFQKYVTCDDQEKLSLLTHTGCYPINNIDYTN--QVIYISDPSMSTCSCTQP 116
            D RF+  +TC++    S L H    P+ ++D  N  +V+Y+S   M       P
Sbjct: 76  LDKRFE--ITCNN----SSLPH----PLFHVDEENEAEVLYMSLEYMRIRDWASP 120


>GSVIVT01016475001 assembled CDS
          Length = 254

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 20/202 (9%)

Query: 39  ISSQACKNSCGNIPIKYPFGTGLGCGDPRFQKYVTCDDQEKLSLLTHTGCYPINNIDYTN 98
           +S+  C + CG  P+ YP  TG  CGD   Q+Y    D+ KL   +    Y I  I    
Sbjct: 19  MSANRCPD-CGTTPVPYPLSTGADCGD---QEYKIRFDEGKLIFDSVNSSYSIAFISPET 74

Query: 99  QVIYISDPSMSTCSCTQ---PSKGFGLDWDAPFSFQDDTVFTLLDCSTTSSPIFRNSNNG 155
           Q + I   S +  +C     P +G  L+   PF+         L+C+ +   +FR+  N 
Sbjct: 75  QRLVIRPASFAGDTCITTDFPKQGIQLNNSLPFNVTSSNTIMFLNCTES---LFRSPLNC 131

Query: 156 SIVPQCDRTGAPICSFLYSCQ-AISRLSLPISTCCVYTPVDLGPAFEMDLQKLQCSSYSG 214
           S +  C        +++   Q A + +  PI  CC +       A+ + +++  CS+Y  
Sbjct: 132 SSISLCH-------TYINGTQDAAACVDAPI--CCTFKAGGSTTAYSIRVRESGCSAYQS 182

Query: 215 FYSFNGQEDNPENWKYGIALKY 236
           F + +         + G+ L++
Sbjct: 183 FVNLDPNAPLDRWPEPGVELQW 204