Jatropha Genome Database

JcCB0198061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0198061.10 - phase: 0 
         (226 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033905001 assembled CDS                                       171   2e-43
GSVIVT01036076001 assembled CDS                                       100   4e-22

>GSVIVT01033905001 assembled CDS
          Length = 583

 Score =  171 bits (434), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/206 (49%), Positives = 123/206 (59%), Gaps = 19/206 (9%)

Query: 1   MPRQSRAAMEELLPGKIRKRGCXXXXXXXXXIIQNYRFKRAILVGKRGGSSTPVPTWKLM 60
           MPRQ+   ++ L+PGKIRKRGC         ++Q YRFKRAILVGKRGGSSTPVPTW+LM
Sbjct: 1   MPRQNHG-IQGLIPGKIRKRGCSSSSSTSS-VLQKYRFKRAILVGKRGGSSTPVPTWRLM 58

Query: 61  GTARTPSSALRAMDSPKYAASQNGGVIKGKLHQQQQAAPVSARKLAATLWEMNEMPSPKM 120
             +R+P+SA+RAM+SP+   S  GG  K         APVSARKLAATLWEMNEMPSP+ 
Sbjct: 59  -NSRSPASAMRAMESPR---SMGGGKAK--------QAPVSARKLAATLWEMNEMPSPRA 106

Query: 121 KEMVXXXXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXXXXXERMERSGTGSRHRRALS 180
            +                      +                  ER++RSGT S  R+  S
Sbjct: 107 DD-----EKRSKREVRGRERVARSLHSGSLPPHLSDPSHSPVSERIDRSGTSSYRRKTSS 161

Query: 181 ISQRLRLTDHNVGAFDSVSNASLMEV 206
           ISQRLRL DHNVG  DS S+ASLME+
Sbjct: 162 ISQRLRLADHNVGVMDSFSSASLMEI 187


>GSVIVT01036076001 assembled CDS
          Length = 503

 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/190 (42%), Positives = 97/190 (51%), Gaps = 33/190 (17%)

Query: 16  KIRKRGCXXXXXXXXXIIQNYRFKRAILVGKRGGSSTPVPTWKLMGTARTPSSALRAMDS 75
           KIRKRGC         +   YRFKRAILVGKRGGSSTPVPTWK+   +R+PSSAL+A +S
Sbjct: 16  KIRKRGCSSSSSSS--LAHKYRFKRAILVGKRGGSSTPVPTWKV--NSRSPSSALKAAES 71

Query: 76  PKYAASQNGGVIKGKLHQQQQAAPVSARKLAATLWEMNEMPSPKMKEMVXXXXXXXXXXX 135
                       KGK       A VSARKLAATLWE+N+     +KEM            
Sbjct: 72  ----------AAKGK------EASVSARKLAATLWEIND-----VKEM--------RNQK 102

Query: 136 XXXXXXXXXVXXXXXXXXXXXXXXXXXXERMERSGTGSRHRRALSISQRLRLTDHNVGAF 195
                                       ERM+RS  GS  RR  ++SQ+L+ T+ N+G  
Sbjct: 103 ESRSKERVARSAQLLPPHLLDPSHSPFSERMDRSRGGSHRRRRSAVSQKLQTTECNLGGL 162

Query: 196 DSVSNASLME 205
           DS+S AS ME
Sbjct: 163 DSLSTASFME 172