Jatropha Genome Database

JcCB0197871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0197871.10 + phase: 0 
         (517 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037277001 assembled CDS                                       618   e-177
GSVIVT01026708001 assembled CDS                                       556   e-159
GSVIVT01024750001 assembled CDS                                       276   2e-74
GSVIVT01008564001 assembled CDS                                       240   1e-63
GSVIVT01024751001 assembled CDS                                       200   2e-51
GSVIVT01026707001 assembled CDS                                       122   4e-28
GSVIVT01008563001 assembled CDS                                        81   1e-15

>GSVIVT01037277001 assembled CDS
          Length = 507

 Score =  618 bits (1594), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 302/506 (59%), Positives = 371/506 (73%), Gaps = 8/506 (1%)

Query: 13  FIFLLFLAVSCISTAQQQNPIKTIVVLVMENRSFDHMLGWMKKAVNQEINGVTGRECNPV 72
            IF + L + C +     +PIKTIVVLVMENRSFDHMLGWMK+ +N +INGV G E NP+
Sbjct: 4   LIFFIHLLL-CTTVTPLSSPIKTIVVLVMENRSFDHMLGWMKQ-INPQINGVDGSEYNPI 61

Query: 73  STKKPNPQSICFTDDAEFVDPDPGHSFEAVEQQVFGNGSI----PSMSGFVEQALTLSPN 128
           S   P    + FT+ + +VD DP HSF+A+ +Q+FG+ +     P M+GF +QA T S  
Sbjct: 62  SPSDPTSPLVFFTNTSHYVDADPPHSFQAIREQIFGSDNASADHPPMNGFAQQATTTS-A 120

Query: 129 LSETVMKGFRPQSVPVYAALVKEFAVFDRWFSSIPGPTQPNRLFVYSATSHGSTSHVKKQ 188
             +TVM GF P  V VY  LV EFAVFDRWF+S+P  TQPNRLFV+SATS G+T ++   
Sbjct: 121 APQTVMSGFDPSMVAVYKTLVSEFAVFDRWFASVPASTQPNRLFVHSATSAGATGNIPTM 180

Query: 189 LAQGYPQKTIFDSLHENGKKFGIYFQNIPTTLFYRNMRKLKYIFKFHQFDLKFKKDARDG 248
           LA+GYPQ+TIFD+L   G  FGIY+QNIP TLFY+++RKLKY+ KFH + L F++ AR+G
Sbjct: 181 LAKGYPQRTIFDNLDAAGVPFGIYYQNIPATLFYQSLRKLKYLDKFHFYGLSFERHAREG 240

Query: 249 KLPSLTVIEPRYFDLKGVPANDDHPSHDVANGQKLVKEVYEALRAGPQWNETLLVITYDE 308
           KLP  TVIE RY D K  P NDDHPSHDV  GQ  VKEVYE LRA PQWNETLLVITYDE
Sbjct: 241 KLPGYTVIEQRYMDTKVEPGNDDHPSHDVYEGQMFVKEVYETLRASPQWNETLLVITYDE 300

Query: 309 HGGFYDHVKTPYVNVPNPDGNTGPAPSFFKFDRLGVRVPTIMVSPWIKKGTVISGPKG-P 367
           HGGFYDHV TP   VP+PDG  GP P  F FDRLGVRVPTIMVSPWI KGTV+ GP G P
Sbjct: 301 HGGFYDHVPTPVRGVPSPDGIAGPEPFLFGFDRLGVRVPTIMVSPWIDKGTVVHGPNGSP 360

Query: 368 TPNSEFEHSSIPASIKKMFNLSSNFLTHRDAWAGTFEEVVQGLSSPRTDCPETLPDVLPL 427
            P SE+EHSSIPA++KK+FNLSS FLT RD WAGTFE +VQ  + PRTDCPE LP  + +
Sbjct: 361 FPTSEYEHSSIPATVKKIFNLSSPFLTKRDEWAGTFEGIVQTRTQPRTDCPEQLPKPMRM 420

Query: 428 RTTEAKEESSLSEFQSEVVQLAAVLNGDHFLSSFPDGMSEKMNVREAHEYVRGAVTRFIR 487
           R  EA E + LSEFQ E++QLAAVL GD+ L+S+P+ + ++MNV++  +Y+  AV +F+ 
Sbjct: 421 RKGEANESAKLSEFQEELLQLAAVLKGDNILTSYPEKIGKQMNVKQGKKYMEDAVKQFLE 480

Query: 488 ASKEAIKLGADQSAIVDMRSSLTTRS 513
           A   A ++G ++  IV MR SLTTRS
Sbjct: 481 AGLSAKRMGVNEEQIVKMRPSLTTRS 506


>GSVIVT01026708001 assembled CDS
          Length = 487

 Score =  556 bits (1434), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 275/472 (58%), Positives = 341/472 (72%), Gaps = 14/472 (2%)

Query: 55  KAVNQEINGVTGRECNPVSTKKPNPQSICFTDDAEFVDPDPGHSFEAVEQQVFG------ 108
           K++N EI+GVTG E NP+ST  PN   + FTDDA +VDPDPGHSFEA+ +QVFG      
Sbjct: 2   KSLNPEIDGVTGAESNPISTSDPNSPVVHFTDDAGYVDPDPGHSFEAIYEQVFGRPWPAD 61

Query: 109 -----NGSIPSMSGFVEQALTLSPNLSETVMKGFRPQSVPVYAALVKEFAVFDRWFSSIP 163
                    P+M GF +QA      LS+TVMKG +P+++PV++ LV EF V DRWF+S+P
Sbjct: 62  SAASSEPLRPTMDGFAQQAEAKEKGLSKTVMKGLKPEALPVFSELVAEFGVCDRWFASLP 121

Query: 164 GPTQPNRLFVYSATSHGSTSHVKKQLAQGYPQKTIFDSLHENGKKFGIYFQNIPTTLFYR 223
             TQPNRL+V+SATS+G+T +  + LA+GYPQKTIF+SL E+G  FGIY+Q  P+TLFYR
Sbjct: 122 AETQPNRLYVHSATSYGATGNNTEMLAKGYPQKTIFESLEESGFSFGIYYQYPPSTLFYR 181

Query: 224 NMRKLKYIFKFHQFDLKFKKDARDGKLPSLTVIEPRYFDLKGVPANDDHPSHDVANGQKL 283
           N+RKLKYI  FHQFDL FK+   +GKLP+  VIE RYFD K +PANDDHPSHDV+ GQK 
Sbjct: 182 NLRKLKYIDNFHQFDLDFKRHCEEGKLPNYVVIEQRYFDTKLLPANDDHPSHDVSQGQKF 241

Query: 284 VKEVYEALRAGPQWNETLLVITYDEHGGFYDHVKTPYVNVPNPDGNTGPAPSFFKFDRLG 343
           VK VYEALRA PQWN+ L VI YDEHGGFYDHV TP   VP+PD   GP P  F+FDRLG
Sbjct: 242 VKHVYEALRASPQWNDILFVIIYDEHGGFYDHVPTPVTGVPSPDDIVGPEPYNFRFDRLG 301

Query: 344 VRVPTIMVSPWIKKGTVISGPKGPTPNSEFEHSSIPASIKKMFNLSSNFLTHRDAWAGTF 403
           VRVP I++SPWI++GTV+ GP GP P SEFEHSSIPA++KK+FNL   FLT RDAWAGTF
Sbjct: 302 VRVPAILISPWIERGTVLHGPSGPYPTSEFEHSSIPATVKKLFNL-KEFLTKRDAWAGTF 360

Query: 404 EEVVQGLSSPRTDCPETLPDVLPLRTTEAKEESSLSEFQSEVVQLAAVLNGDHFLSSFPD 463
           E V+    +PRTDCP TLP+ + LR TEAK+E+ LSEFQ E+VQ+AA L GDH    +P 
Sbjct: 361 EGVLT-RETPRTDCPVTLPEPVKLRETEAKDEAELSEFQQELVQMAAALKGDHRKDIYPH 419

Query: 464 GMSEKMNVREAHEYVRGAVTRFIRASKEAIKLGA-DQSAIVDMRSSLTTRSS 514
            + + MNV +A +YV  A  +F+   ++A   G  D S IV    +   R+S
Sbjct: 420 KLVQDMNVSDATKYVNNAFNQFLDECQKAKTSGTHDSSDIVLCPQTPPKRTS 471


>GSVIVT01024750001 assembled CDS
          Length = 226

 Score =  276 bits (705), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 135/213 (63%), Positives = 164/213 (76%), Gaps = 2/213 (0%)

Query: 302 LVITYDEHGGFYDHVKTPYVNVPNPDGNTGPAPSFFKFDRLGVRVPTIMVSPWIKKGTVI 361
           L+ITYDEHGGFYDHV TP   VPNPDG  GP P +F+FDRLGVRVPTI+VSPWI+KGTVI
Sbjct: 3   LLITYDEHGGFYDHVPTPVSGVPNPDGIIGPDPFYFRFDRLGVRVPTILVSPWIEKGTVI 62

Query: 362 SGPKGPTPNSEFEHSSIPASIKKMFNLSSNFLTHRDAWAGTFEEVVQGLSSPRTDCPETL 421
             P GPTP+S+FEHSSIPA++KK+FNL SNFLT RDAWAGTFE       +PR DCPETL
Sbjct: 63  HEPTGPTPHSQFEHSSIPATVKKLFNLKSNFLTKRDAWAGTFENYFYFRDTPRDDCPETL 122

Query: 422 PDV-LPLRTTEAKEESSLSEFQSEVVQLAAVLNGDHFLSSFPDGMSEKMNVREAHEYVRG 480
           P+V  PLR    KE+ SLSEFQ E++QLA+ LNGD+ L+++P  + + M V EA+ Y   
Sbjct: 123 PEVTTPLRPRGPKEDLSLSEFQVELIQLASQLNGDYVLNTYP-YIGKSMTVGEANRYAED 181

Query: 481 AVTRFIRASKEAIKLGADQSAIVDMRSSLTTRS 513
           AV RF+ A K A++ GA+ SAIV MR SLT+R+
Sbjct: 182 AVRRFLEAGKAALRAGANDSAIVTMRPSLTSRT 214


>GSVIVT01008564001 assembled CDS
          Length = 168

 Score =  240 bits (613), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 115/167 (68%), Positives = 135/167 (80%)

Query: 350 MVSPWIKKGTVISGPKGPTPNSEFEHSSIPASIKKMFNLSSNFLTHRDAWAGTFEEVVQG 409
           MVSPWIKKGT+++ P GP  NSEFEHSSIPA+IKKM+NL SNFLTHRDAWAGTFE VV  
Sbjct: 1   MVSPWIKKGTIVTRPNGPAENSEFEHSSIPATIKKMYNLPSNFLTHRDAWAGTFESVVGE 60

Query: 410 LSSPRTDCPETLPDVLPLRTTEAKEESSLSEFQSEVVQLAAVLNGDHFLSSFPDGMSEKM 469
           L+SPRTDCP   P + PLR TEA E+  LSEFQ+E+VQLAAVL GDH L+SFPD + + M
Sbjct: 61  LTSPRTDCPGNHPSLTPLRKTEADEDRQLSEFQNEIVQLAAVLKGDHHLTSFPDELFKNM 120

Query: 470 NVREAHEYVRGAVTRFIRASKEAIKLGADQSAIVDMRSSLTTRSSVH 516
            V+E  +YV GAV RF  AS++A  +GAD+SAIVDMRSSLTT+ SVH
Sbjct: 121 TVKEGRDYVIGAVARFKTASRQAFIMGADESAIVDMRSSLTTQPSVH 167


>GSVIVT01024751001 assembled CDS
          Length = 201

 Score =  200 bits (508), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/194 (52%), Positives = 127/194 (65%), Gaps = 31/194 (15%)

Query: 30  QNPIKTIVVLVMENRSFDHMLGWMKKAVNQEINGVTGRECNPVSTKKPNPQSICFTDDAE 89
             PIKT+VVLVMENRSFDH+LGW+K A   EI+G+TG+E N V           F     
Sbjct: 34  HGPIKTLVVLVMENRSFDHVLGWLKSA-RPEIDGLTGKESNRV-----------FGTGDW 81

Query: 90  FVDPDPGHSFEAVEQQVFGNGSIPSMSGFVEQALTLSPNLSETVMKGFRPQSVPVYAALV 149
           F +P P                   MSGF +QA  +S  LS+TVM GF+P  +PVY AL 
Sbjct: 82  FQNPAP-------------------MSGFAQQAKNMSEGLSKTVMSGFKPAVLPVYTALA 122

Query: 150 KEFAVFDRWFSSIPGPTQPNRLFVYSATSHGSTSHVKKQLAQGYPQKTIFDSLHENGKKF 209
            EFAVFDRWF+++P  TQPNR +V+SATSHG+TS+V+K L  G+PQ+TIFDSL EN   F
Sbjct: 123 NEFAVFDRWFAAVPASTQPNRFYVHSATSHGATSNVRKDLIHGFPQRTIFDSLDENDLSF 182

Query: 210 GIYFQNIPTTLFYR 223
           GIY+QNIP TLF++
Sbjct: 183 GIYYQNIPATLFFK 196


>GSVIVT01026707001 assembled CDS
          Length = 95

 Score =  122 bits (306), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 72/90 (80%)

Query: 134 MKGFRPQSVPVYAALVKEFAVFDRWFSSIPGPTQPNRLFVYSATSHGSTSHVKKQLAQGY 193
           M G++P+++ VY  LV EF V DRWF+S+P  TQPNRL+V+SATSHG+T +  ++L +GY
Sbjct: 1   MNGYKPEALAVYRELVGEFGVCDRWFASLPASTQPNRLYVHSATSHGATGNDTEKLIKGY 60

Query: 194 PQKTIFDSLHENGKKFGIYFQNIPTTLFYR 223
           PQKTIF+SL E+G  FGIY+Q+ P TLFYR
Sbjct: 61  PQKTIFESLEESGFSFGIYYQDPPATLFYR 90


>GSVIVT01008563001 assembled CDS
          Length = 98

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/51 (70%), Positives = 44/51 (86%), Gaps = 1/51 (1%)

Query: 53  MKKAVNQEINGVTGRECNPVSTKKPNPQSICFTDDAEFVDPDPGHSFEAVE 103
           MK++ N  INGVTG+ECNPVSTK P+ ++ICF DDAE+VDPDPGHSF AV+
Sbjct: 1   MKRS-NSAINGVTGKECNPVSTKNPSEETICFKDDAEYVDPDPGHSFVAVK 50