Jatropha Genome Database

JcCB0194971.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0194971.10 - phase: 0 /pseudo
         (175 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024609001 assembled CDS                                       225   7e-60
GSVIVT01030227001 assembled CDS                                       213   4e-56
GSVIVT01022201001 assembled CDS                                       191   1e-49
GSVIVT01021525001 assembled CDS                                        50   6e-07

>GSVIVT01024609001 assembled CDS
          Length = 436

 Score =  225 bits (574), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 98/116 (84%), Positives = 111/116 (95%)

Query: 42  MPPFDYSPPPYTGPSSEEIMTKRKEFLSPSLFHFYKKPLNVVDGKMQYLFDENGRRYLDA 101
           MPPFDYSPPPYTGPS+ EI+ KR+E+LSPSLFHFY  PLN+VDGKMQYLFDENGRRYLDA
Sbjct: 1   MPPFDYSPPPYTGPSAAEILKKRQEYLSPSLFHFYSNPLNLVDGKMQYLFDENGRRYLDA 60

Query: 102 FGGIATVCCGHCHPDIIDSIVNQIKRLQHSTVLYLNHAIADFAEALASKMPGNLKV 157
           FGGIATVCCGHCHPD++++IV+Q +RLQHSTVLYLNHAIA+FAEALASKMPG+LKV
Sbjct: 61  FGGIATVCCGHCHPDVVEAIVSQTQRLQHSTVLYLNHAIAEFAEALASKMPGDLKV 116


>GSVIVT01030227001 assembled CDS
          Length = 436

 Score =  213 bits (541), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 94/116 (81%), Positives = 106/116 (91%)

Query: 42  MPPFDYSPPPYTGPSSEEIMTKRKEFLSPSLFHFYKKPLNVVDGKMQYLFDENGRRYLDA 101
           MPPFDYSPPPY GPS+ +I+ KRK++LSPS+F FY +P+N+VDGKMQYLFDE GRRYLDA
Sbjct: 1   MPPFDYSPPPYNGPSAADILQKRKQYLSPSIFCFYNQPVNIVDGKMQYLFDEKGRRYLDA 60

Query: 102 FGGIATVCCGHCHPDIIDSIVNQIKRLQHSTVLYLNHAIADFAEALASKMPGNLKV 157
           FGGIATV CGHCHPD++D IV QI RLQHSTVLYLNHAIADFAEALASKMPG+LKV
Sbjct: 61  FGGIATVNCGHCHPDVVDVIVKQINRLQHSTVLYLNHAIADFAEALASKMPGDLKV 116


>GSVIVT01022201001 assembled CDS
          Length = 472

 Score =  191 bits (486), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 82/118 (69%), Positives = 103/118 (87%)

Query: 40  PKMPPFDYSPPPYTGPSSEEIMTKRKEFLSPSLFHFYKKPLNVVDGKMQYLFDENGRRYL 99
           P +P FD+ P PYTGP ++E++ KRK+FL  SLF++Y+KP+NVV+GKMQYLFDENG+RYL
Sbjct: 35  PVLPAFDHQPKPYTGPLADEVLQKRKKFLGSSLFYYYQKPVNVVEGKMQYLFDENGKRYL 94

Query: 100 DAFGGIATVCCGHCHPDIIDSIVNQIKRLQHSTVLYLNHAIADFAEALASKMPGNLKV 157
           DAF GI TV CGHCHP+I+++I+ Q K LQH+T +YL+HAIADFAEALASKMPGNLKV
Sbjct: 95  DAFAGIVTVSCGHCHPEILNAIIEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKV 152


>GSVIVT01021525001 assembled CDS
          Length = 466

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 56  SSEEIMTKRKEFLSPSLFHFYKKPLNVVDGKMQYLFDENGRRYLDAFGGIATVCCGHCHP 115
           SS+ ++    E+   S  +++  P+     K   ++D  G++YLD     + V  GHCHP
Sbjct: 29  SSQHLINLEYEY---SAHNYHPIPIVFSQAKGSTIWDPEGKKYLDFLSAYSAVNQGHCHP 85

Query: 116 DIIDSIVNQIKRLQHSTVLYLNHAIADFAEAL 147
            ++ ++V Q +RL  S+  + N     FAE L
Sbjct: 86  KVLKALVEQAERLTLSSRAFYNDRFPIFAERL 117