Jatropha Genome Database

JcCB0193291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0193291.10 - phase: 1 /pseudo/partial
         (218 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000552001 assembled CDS                                       226   5e-60

>GSVIVT01000552001 assembled CDS
          Length = 237

 Score =  226 bits (577), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 105/129 (81%), Positives = 119/129 (92%)

Query: 14  GSAIGALVDPRRADFIAALGETTGKPAFEKVLQRMKRSPEGRAVVLERPHVISAEVRHAW 73
           GSAIGAL+DPRRAD IAALGETTGKPAFE+VL+RMK+SPEG+A++L+RP V+SA V HAW
Sbjct: 20  GSAIGALMDPRRADLIAALGETTGKPAFERVLERMKKSPEGQAILLDRPRVVSARVGHAW 79

Query: 74  DLPENTYGAAYARFMGSTNFSPDDRPPVRFMDTDELAYVALRAREPQDFWHTLFDLPTNL 133
           D+P NT+GAAYA+FMGS NFSPDDRPPVRFM+TDELAYVA+RARE  DFWHTLF LPTNL
Sbjct: 80  DMPANTFGAAYAKFMGSRNFSPDDRPPVRFMETDELAYVAMRAREVHDFWHTLFSLPTNL 139

Query: 134 ICESALKVI 142
           I ESALKVI
Sbjct: 140 IGESALKVI 148