Jatropha Genome Database

JcCB0192641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0192641.10 + phase: 0 /pseudo
         (234 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010100001 assembled CDS                                       271   3e-73
GSVIVT01008164001 assembled CDS                                       202   8e-53
GSVIVT01036533001 assembled CDS                                       175   2e-44

>GSVIVT01010100001 assembled CDS
          Length = 328

 Score =  271 bits (692), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 130/193 (67%), Positives = 151/193 (78%), Gaps = 1/193 (0%)

Query: 1   ILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWTSEPTKLMPWRNSHWRV 60
           ILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQG T EPTKLMPWRNSHWRV
Sbjct: 62  ILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGLTPEPTKLMPWRNSHWRV 121

Query: 61  QSFMGHPQTVKNGSGPGLTFPGKFDENNIAISPSMLTSTQNLVEPDTSRDIASKGMERQP 120
           QSF+GHPQ + NGSGPG  F GKFDENNI I+ +ML   QN VE D SRD   K M+ Q 
Sbjct: 122 QSFVGHPQAINNGSGPGSAFSGKFDENNINITSTMLVKAQNPVESDLSRDATCKAMDHQS 181

Query: 121 ELANKVMPLPMSLQTTMPTPVQSDGVVANPLQQSVSGVHLADFPVSGDAPNQQEKVPIEG 180
           E  NK + +P+SLQ+ M  PVQS+G + +PLQ  VS    AD P++ +  +++E++ IEG
Sbjct: 182 EF-NKAIVMPISLQSNMSAPVQSEGGLVHPLQGPVSDAQSADCPITSETLSKKEELMIEG 240

Query: 181 GTISISSVYSQGV 193
           GTISISS YSQG+
Sbjct: 241 GTISISSAYSQGL 253


>GSVIVT01008164001 assembled CDS
          Length = 565

 Score =  202 bits (515), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 108/210 (51%), Positives = 134/210 (63%), Gaps = 18/210 (8%)

Query: 1   ILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWTSEPTKLMPWRNSHWRV 60
           +LRDLIPHSDQKRD ASFLLEVIEY+Q+LQEKV KYEGS+QGW  E  KLMPWRNSH   
Sbjct: 280 MLRDLIPHSDQKRDKASFLLEVIEYIQFLQEKVHKYEGSFQGWNHESAKLMPWRNSHRPA 339

Query: 61  QSFMGHPQTVKNGSGPGLTFPGKFDENNIAISPSMLTSTQNLVEPDTSRDIASKGMERQP 120
           +SF    + + +GSGP L F  KFDENN+A+SP++  +TQN VE D S     K M+R P
Sbjct: 340 ESFADQSRGINSGSGPALMFSAKFDENNVAVSPNISRNTQNPVESDLSASTTFKAMDRHP 399

Query: 121 ELANKVMPLPMSLQTTMPTPVQSDGVVAN-PLQQSVSGVHLADFP--------------- 164
            L NK +P+ M LQ  + TPV   G +A  P + +    ++A  P               
Sbjct: 400 GLTNKAVPIHMQLQPNIFTPVVGGGGLAQLPPRLAPDAENMASLPQSQLWQSRSSVTTEC 459

Query: 165 -VSGDAPNQQEKVPIEGGTISISSVYSQGV 193
            V+ D   +QE + IEGGTISISS YSQG+
Sbjct: 460 TVASDKLKEQE-LTIEGGTISISSAYSQGL 488


>GSVIVT01036533001 assembled CDS
          Length = 402

 Score =  175 bits (443), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/209 (48%), Positives = 126/209 (60%), Gaps = 26/209 (12%)

Query: 1   ILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWTSEPTKLMPWRNSHWRV 60
           ILRDLIP +DQKRD ASFLLEVIEY+Q+LQEK+  YEGSYQGW+ EPTKLMPWRN    V
Sbjct: 126 ILRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLNMYEGSYQGWSQEPTKLMPWRN-RGPV 184

Query: 61  QSFMGHPQTVKNGSGPGLTFPGKFDENNIAISPSMLTSTQNLVEPDTSRDIASKGMERQP 120
           ++FM H Q +KNGSG          ENN+A++P+ L + QN VE D     A   M+  P
Sbjct: 185 ENFMDHSQVIKNGSG---------HENNVAVTPATLVNAQNPVESDFGTAAAYNVMDNTP 235

Query: 121 ELANKVMPLPMSLQTTMPTPVQSDGVVANPLQQSVSGV---------HLA-------DFP 164
             A++ +PL M LQT M T V    +    L  SVS V         H +       D  
Sbjct: 236 GPASQAVPLNMPLQTNMFTHVGRSDIPTQSLHGSVSDVENIASQPLPHFSHGRPCTTDCA 295

Query: 165 VSGDAPNQQEKVPIEGGTISISSVYSQGV 193
           V  +  N+ E++ IE GT+SISS YSQG+
Sbjct: 296 VPSNTVNEPEELTIESGTVSISSAYSQGL 324