Jatropha Genome Database

JcCB0192111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0192111.10 + phase: 2 /pseudo/partial
         (263 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016549001 assembled CDS                                       168   2e-42
GSVIVT01034016001 assembled CDS                                        50   9e-07

>GSVIVT01016549001 assembled CDS
          Length = 281

 Score =  168 bits (425), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/130 (64%), Positives = 96/130 (73%), Gaps = 12/130 (9%)

Query: 117 NCSSYWTFGCYMAYYVNHPLYAPVSDLQXKIGFWLWFDLSS----CKLLLPYLVGKKKKN 172
           NC+ YWTFG Y+AYYVNHPLY PVSDLQ KIGF            C +LL        +N
Sbjct: 139 NCAYYWTFGSYIAYYVNHPLYTPVSDLQMKIGFGFGLVCQVTNFYCHILL--------RN 190

Query: 173 LCSPDWSGGYQIPRGFLFNMVTCSNYTTEVYQWLGFNIAMQTVAGYFFLVVASMIMTNWA 232
           L SPD +GGYQIP GFLFN+VTC+NYTTE+YQW+GFNIA QTVAGY FLVVA+ IMTNWA
Sbjct: 191 LRSPDGNGGYQIPHGFLFNIVTCANYTTEIYQWVGFNIATQTVAGYVFLVVAAAIMTNWA 250

Query: 233 FANHRQLTKV 242
            A HR+L K+
Sbjct: 251 LAKHRRLRKL 260


>GSVIVT01034016001 assembled CDS
          Length = 257

 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 7/73 (9%)

Query: 165 LVGKKKKNLCSPDWSGGYQIPRGFLFNMVTCSNYTTEVYQWLGFNIAMQTVAGYFFLVVA 224
           LVG K +        GGY++PRG  F +V+C+NY  EV +WLG+ +   +  G  FL+  
Sbjct: 170 LVGLKSQ-------GGGYKVPRGGWFELVSCANYFGEVVEWLGWAVMTWSWVGLGFLLYT 222

Query: 225 SMIMTNWAFANHR 237
              +   A ANH+
Sbjct: 223 CANLVPRARANHK 235