Jatropha Genome Database

JcCB0191431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0191431.10 + phase: 2 /partial
         (141 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035647001 assembled CDS                                       203   2e-53
GSVIVT01009245001 assembled CDS                                       171   8e-44
GSVIVT01025636001 assembled CDS                                        94   2e-20

>GSVIVT01035647001 assembled CDS
          Length = 448

 Score =  203 bits (517), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 97/142 (68%), Positives = 113/142 (79%), Gaps = 4/142 (2%)

Query: 1   RFGTWTVAKVM-GQSKGFLDGPVCNGTRVIGWHVNEXXXXXXXXXXXHVDMSGFAFNSTI 59
           RFGTWTVAK+M  +SK  L+GPVCNG++VIGWH NE           H +MSGFAFNSTI
Sbjct: 310 RFGTWTVAKLMESKSKTLLEGPVCNGSQVIGWHTNEMTRRFRRF---HTEMSGFAFNSTI 366

Query: 60  LWDPKRWHRPTIEPIRLLDTVRDGFQVSTIIEQVVEDESQMEGLLQDCSRVMVWHLQLES 119
           LWDPKRWHRPT+EPIR LDTV++GFQVST IE++VEDESQMEGL + CS +MVWHL LES
Sbjct: 367 LWDPKRWHRPTLEPIRQLDTVKEGFQVSTFIERLVEDESQMEGLPEGCSTIMVWHLHLES 426

Query: 120 SNPFYPPKWFTISNLDVTAQLA 141
           S+ FYP +W   +NLDV AQLA
Sbjct: 427 SHSFYPREWLMKNNLDVIAQLA 448


>GSVIVT01009245001 assembled CDS
          Length = 381

 Score =  171 bits (434), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 83/137 (60%), Positives = 97/137 (70%), Gaps = 4/137 (2%)

Query: 1   RFGTWTVAKV-MGQSKGFLDGPVCNGTRVIGWHVNEXXXXXXXXXXXHVDMSGFAFNSTI 59
           RFGTW VA +   ++K  L+GPVCNG++VIGWH NE           HVDMSGFAFNSTI
Sbjct: 243 RFGTWPVAMLAQSKNKAILEGPVCNGSQVIGWHTNEKSKRLRRF---HVDMSGFAFNSTI 299

Query: 60  LWDPKRWHRPTIEPIRLLDTVRDGFQVSTIIEQVVEDESQMEGLLQDCSRVMVWHLQLES 119
           LWDPK+W RPT  PI+ LDTV++GFQ +T IEQ+VEDESQMEG    CSR+M WHL LE+
Sbjct: 300 LWDPKKWRRPTSAPIQQLDTVKEGFQETTFIEQLVEDESQMEGTPAGCSRIMNWHLHLEA 359

Query: 120 SNPFYPPKWFTISNLDV 136
            N  YP  W    NLDV
Sbjct: 360 RNLVYPRGWLLQKNLDV 376


>GSVIVT01025636001 assembled CDS
          Length = 292

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 77/120 (64%), Gaps = 14/120 (11%)

Query: 2   FGTWTVAKV-MGQSKGFLDGPVCNGTRVIGWHVNEXXXXXXXXXXXHVDMSGFAFNSTIL 60
           FGTW +A +   ++K  ++GPVC+ ++VIGWH+ +           H+  SGF+FNS+IL
Sbjct: 163 FGTWPMASLSANRNKVIMEGPVCDSSQVIGWHLKKMNNETETRSPLHI--SGFSFNSSIL 220

Query: 61  WDPKRWHRPTIEPIRLLDTVRDGFQ--VSTIIEQVVEDESQMEGLLQ-DCSRVMVWHLQL 117
           WDP+RW RP+        +V+D  Q  +  + E  +EDES+++G+ Q DCSR+++W+L +
Sbjct: 221 WDPERWGRPS--------SVQDNSQNSIKFVKEVALEDESKLKGIPQEDCSRILLWNLHI 272