Jatropha Genome Database

JcCB0190821.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0190821.20 - phase: 2 /partial
         (66 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009698001 assembled CDS                                        84   1e-17
GSVIVT01015373001 assembled CDS                                        69   3e-13
GSVIVT01022280001 assembled CDS                                        57   2e-09

>GSVIVT01009698001 assembled CDS
          Length = 264

 Score = 84.0 bits (206), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/66 (56%), Positives = 51/66 (77%)

Query: 1   YVPTNHLYVGDIFLLNTNDIMRPNLSVRXXXXXXXXXXMSVPQIMTTLDAQAIPATRLSK 60
           YVP+NHLY+GD+FL+++ DI+RPNLSVR          MSVPQI+TT+DAQAIPA+R+  
Sbjct: 199 YVPSNHLYIGDVFLISSMDILRPNLSVREGIEIVISGGMSVPQILTTIDAQAIPASRIGN 258

Query: 61  FPSSEV 66
             +++V
Sbjct: 259 LVAAKV 264


>GSVIVT01015373001 assembled CDS
          Length = 266

 Score = 69.3 bits (168), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 40/57 (70%)

Query: 1   YVPTNHLYVGDIFLLNTNDIMRPNLSVRXXXXXXXXXXMSVPQIMTTLDAQAIPATR 57
           YVPTNHLY+GDIFL+N  D++RPNLSVR          MS+PQI++T+D++     R
Sbjct: 204 YVPTNHLYIGDIFLVNCKDVIRPNLSVREGIEIVVSGGMSMPQILSTVDSRITTVDR 260


>GSVIVT01022280001 assembled CDS
          Length = 255

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 34/48 (70%)

Query: 1   YVPTNHLYVGDIFLLNTNDIMRPNLSVRXXXXXXXXXXMSVPQIMTTL 48
           +VPTNHLY+GDIFL+N+ +I+RPNLS+R          M++PQ +  L
Sbjct: 195 FVPTNHLYIGDIFLVNSKEIIRPNLSIREGIEIIVSGGMTMPQTIAPL 242