Jatropha Genome Database

JcCB0190821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0190821.10 - phase: 0 /pseudo
         (236 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009697001 assembled CDS                                       359   e-100
GSVIVT01025961001 assembled CDS                                        72   2e-13
GSVIVT01009147001 assembled CDS                                        49   2e-06

>GSVIVT01009697001 assembled CDS
          Length = 568

 Score =  359 bits (922), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 166/207 (80%), Positives = 193/207 (93%)

Query: 1   MASAALICDTHPWKTLKAHVEDIKKTHLRDLMSDSERCKSMVVEFDGIIVDFSRQQATVD 60
           MAS+ LICDT PWK L+AHVEDIKKTHLRDLMSD++RC+SM+VEFDG+++D+SRQ AT++
Sbjct: 1   MASSTLICDTEPWKNLRAHVEDIKKTHLRDLMSDTKRCQSMMVEFDGLLLDYSRQCATLE 60

Query: 61  TVDKLYNLAEAAHLKEKIHHMFNGERINTTENRSVLHVALRAPRDAVIKSDGKNVVPDVW 120
           T+DKL+ LAEA +LK+KI  M+NGERIN+TENR VLHVALRAPRD+VI+SDGKNVVPDVW
Sbjct: 61  TMDKLFKLAEAENLKQKIGRMYNGERINSTENRPVLHVALRAPRDSVIQSDGKNVVPDVW 120

Query: 121 NVLDKIKDFSERLRNGSWVGATGKQLTDVIAIGIGGSFLGPLFVHTALQTDPEASKFAKG 180
            VLDKI+ FSE +R+GSWVGATGK LTDVI++GIGGSFLGPLFVHTALQTDPEASKFAKG
Sbjct: 121 KVLDKIQVFSETVRSGSWVGATGKALTDVISVGIGGSFLGPLFVHTALQTDPEASKFAKG 180

Query: 181 RQLRFLANVDPIDVARNIAGLHPETTL 207
           RQLRFLANVDP+DVARNI GL+PETTL
Sbjct: 181 RQLRFLANVDPVDVARNITGLNPETTL 207


>GSVIVT01025961001 assembled CDS
          Length = 155

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 9/124 (7%)

Query: 18  AHVEDIKKTHLRDLMSDSERCKSMVVEFDGIIVDFSRQQATVDTVDKLYNLAEAAHLKEK 77
           ++++ +K +H ++L+   E   S V   D    D    + +V  +  L N  ++    E 
Sbjct: 36  SNLKGLKLSHCKNLLQIPE-LPSSVQFLDAHWSDGISSRPSVPPIRSLINCFKS----EL 90

Query: 78  IHHMFNGERINTTENRSVLHVALRAPRDAVIKSDGKNVVPDVWNVLDKIKDFSERLRNGS 137
           I ++    +IN+TENR   HVAL AP+D +I  DGKN+VP+V+ VLDKI  F E + NGS
Sbjct: 91  IPYV----QINSTENRPAFHVALHAPKDVIILRDGKNMVPNVYKVLDKIGVFFETVCNGS 146

Query: 138 WVGA 141
            VG 
Sbjct: 147 LVGG 150


>GSVIVT01009147001 assembled CDS
          Length = 480

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 8/86 (9%)

Query: 121 NVLDKIKDFSERLRNGSWVGATGKQ--LTDVIAIGIGGSFLGPLFVHTALQTDPEASKFA 178
           N L+ +  F+E + +G     +  +   T V+++GIGGS LGP FV  AL  D    K  
Sbjct: 24  NTLEAVCKFAEDVVSGKIKPPSSPEGRFTHVLSVGIGGSALGPQFVAEALAPDNPPLK-- 81

Query: 179 KGRQLRFLANVDPIDVARNIAGLHPE 204
               +RF+ N DP  +   IA L PE
Sbjct: 82  ----IRFIDNTDPAGIDHQIAQLGPE 103