Jatropha Genome Database

JcCB0190191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0190191.10 + phase: 2 /partial
         (83 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009087001 assembled CDS                                       166   2e-42
GSVIVT01035168001 assembled CDS                                       115   3e-27
GSVIVT01011096001 assembled CDS                                        49   3e-07

>GSVIVT01009087001 assembled CDS
          Length = 775

 Score =  166 bits (420), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 74/83 (89%), Positives = 80/83 (96%)

Query: 1   CNHPVVMELILDSLRHWVAEYHVDGFRFDLASILCRGTDGSPLDSPPVIRAIAKDPILSR 60
           CNHP+VMELILDSLRHWV EYHVDGFRFDLAS+LCRGTDGSPL++PP+IR IAKD ILSR
Sbjct: 411 CNHPMVMELILDSLRHWVIEYHVDGFRFDLASVLCRGTDGSPLNAPPIIREIAKDDILSR 470

Query: 61  CKIIAEPWDCGGLYLVGKFPNWD 83
           CKIIAEPWDCGGLYLVG+FPNWD
Sbjct: 471 CKIIAEPWDCGGLYLVGRFPNWD 493


>GSVIVT01035168001 assembled CDS
          Length = 809

 Score =  115 bits (289), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/101 (54%), Positives = 64/101 (63%), Gaps = 19/101 (18%)

Query: 1   CNHPVVMELILDSLRHWVAEYHVDGFRFDLASILCRG-------------------TDGS 41
           CNHP+V + ILD LR+WV E HVDGFRFDLASI+ RG                   T G+
Sbjct: 406 CNHPIVRQFILDCLRYWVTEMHVDGFRFDLASIMTRGSSLWDALNVYGNPAEGDSLTTGT 465

Query: 42  PLDSPPVIRAIAKDPILSRCKIIAEPWDCGGLYLVGKFPNW 82
           PL SPP+I  I+ DPIL   K+IAE WD GGLY VG FP+W
Sbjct: 466 PLSSPPLIDMISNDPILRGVKLIAEAWDAGGLYQVGMFPHW 506


>GSVIVT01011096001 assembled CDS
          Length = 447

 Score = 49.3 bits (116), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/34 (58%), Positives = 27/34 (79%)

Query: 1   CNHPVVMELILDSLRHWVAEYHVDGFRFDLASIL 34
           CN+ +V ++I+DSLR+WV E+HVDGF F  AS L
Sbjct: 350 CNYSIVQQMIVDSLRYWVTEFHVDGFCFINASSL 383