Jatropha Genome Database

JcCB0189041.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0189041.20 - phase: 2 /partial
         (196 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021790001 assembled CDS                                       183   5e-47
GSVIVT01000714001 assembled CDS                                       145   1e-35
GSVIVT01035557001 assembled CDS                                        80   6e-16

>GSVIVT01021790001 assembled CDS
          Length = 383

 Score =  183 bits (464), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 112/182 (61%), Positives = 121/182 (66%), Gaps = 38/182 (20%)

Query: 15  KQAHLTELETQVAQLRVENSSLLKRLSDISNKYNDASVDNRVLKADVETLRAKVKMAEET 74
           KQAHLTELETQVAQLR+ENSSLLKRL+DIS KYN+A+VDNRVLKADVETLRAKVKMAEET
Sbjct: 240 KQAHLTELETQVAQLRLENSSLLKRLTDISQKYNEAAVDNRVLKADVETLRAKVKMAEET 299

Query: 75  VKRITGLNPLSHSMPEISTISMPSFDGSPSDTLTDAAVPIQDEPKRLYQLPNNPLSTRDP 134
           VKR+TGLNPL  +M EIS   M SFDGSPSDT                            
Sbjct: 300 VKRVTGLNPLFQTMSEISMAGMHSFDGSPSDT---------------------------- 331

Query: 135 RVNNGLTNISSAENIQPPSGTAGLAGNKIGRTASLQRVASLEHLQKRICGTPCGPQSNVE 194
                     SA+   P    AG AGNK+GRTASLQRVASLEHLQKRI G   GPQ +  
Sbjct: 332 ----------SADAAVPNPAAAGAAGNKMGRTASLQRVASLEHLQKRIRGAVNGPQGSGN 381

Query: 195 QQ 196
           QQ
Sbjct: 382 QQ 383


>GSVIVT01000714001 assembled CDS
          Length = 420

 Score =  145 bits (365), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/184 (49%), Positives = 120/184 (65%), Gaps = 24/184 (13%)

Query: 15  KQAHLTELETQVAQLRVENSSLLKRLSDISNKYNDASVDNRVLKADVETLRAKVKMAEET 74
           KQ HL+ELETQV+QL VENSSLLKRL+DI+ KYN+A+VDNRVLKADVETLR KV+MAE+ 
Sbjct: 231 KQEHLSELETQVSQLGVENSSLLKRLTDINQKYNEAAVDNRVLKADVETLRTKVRMAEDA 290

Query: 75  VKRITGLNPLSHSMPEISTISMPSFDGSPSDTLTDAAVPIQDEPKRLYQ--LPNNPLS-T 131
           VKR+TGL  L  ++P+I ++ MP  + + S+T  DAAVP+Q +        +PNN ++  
Sbjct: 291 VKRVTGLTSLLPAIPDIPSMGMPFVNNTSSNTSADAAVPVQRDSNHFIHPPVPNNLIAPP 350

Query: 132 RDPRVNNGL-TNISSAENIQPPSGTAGL---AGNK-IGRTASLQRVASLEHLQKRIC--G 184
            D R+NNG  TN        PP  T  L   AG K + +T+ +Q V+       R+C   
Sbjct: 351 HDQRLNNGFPTNC-------PPLPTESLLNGAGPKNMPQTSPMQNVS-------RVCVGA 396

Query: 185 TPCG 188
            PCG
Sbjct: 397 NPCG 400


>GSVIVT01035557001 assembled CDS
          Length = 419

 Score = 80.1 bits (196), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 54/72 (75%)

Query: 15  KQAHLTELETQVAQLRVENSSLLKRLSDISNKYNDASVDNRVLKADVETLRAKVKMAEET 74
           KQAHL +LE QV QLR EN+SL K+L+D S ++ DA+ +NRVLK+DVE LRAKV++ E  
Sbjct: 270 KQAHLADLELQVEQLRGENASLYKQLTDASQQFGDANTNNRVLKSDVEALRAKVELVEGM 329

Query: 75  VKRITGLNPLSH 86
           V R +  + L+H
Sbjct: 330 VARGSVTSSLNH 341