Jatropha Genome Database

JcCB0189041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0189041.10 + phase: 1 /pseudo/partial
         (85 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021789001 assembled CDS                                        52   5e-08

>GSVIVT01021789001 assembled CDS
          Length = 471

 Score = 52.4 bits (124), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/34 (67%), Positives = 29/34 (85%)

Query: 46  SENYVAFSSVFASAERWEDVEMVRKEMKVGRIET 79
           SE+++A S+V+ASAERWEDVE VR+ MKV  IET
Sbjct: 427 SEDFIALSNVYASAERWEDVETVREAMKVKGIET 460