Jatropha Genome Database

JcCB0188421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0188421.10 + phase: 1 /TE/partial
         (783 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010555001 assembled CDS                                        83   5e-16
GSVIVT01024357001 assembled CDS                                        75   9e-14
GSVIVT01017026001 assembled CDS                                        62   1e-09
GSVIVT01028612001 assembled CDS                                        58   2e-08
GSVIVT01014104001 assembled CDS                                        57   4e-08

>GSVIVT01010555001 assembled CDS
          Length = 147

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 61/88 (69%), Gaps = 1/88 (1%)

Query: 381 MDVQNAFLHGDLNEEVYMKMPPGFVSQTSRKVCRLQKSPYGLRKAPLCWFAKLATSLKTY 440
           MDV+NAFL+GDL+EEVYM+ PPG +S  S KVC L+++ YGL++AP  WFAK ++++   
Sbjct: 1   MDVKNAFLNGDLSEEVYMQPPPG-LSVESNKVCHLRRALYGLKQAPRAWFAKFSSTIFRL 59

Query: 441 GFKQSYSGYSLFTFRNGHGQLNILVYVD 468
           G+  S    +LF  R   G + +L+Y +
Sbjct: 60  GYTASPYDSALFLRRTDKGTILLLLYSN 87


>GSVIVT01024357001 assembled CDS
          Length = 851

 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 55/95 (57%)

Query: 30  ECILTTGYLINRILSMLLNGRTPYEILFGQVPSYRHIRTFGCLCYAYNLNKDKDKFASRS 89
           E + T  YL+NR  +  L  +T  E   G+ PS RH + FGCLCY+    + + K    S
Sbjct: 549 EAVNTVVYLLNRCPTKALLNKTLIEAWSGRNPSVRHFKVFGCLCYSQVPKERRSKLDETS 608

Query: 90  RKCTFIGYKYEKKGWKLYDLETREYFIFKDVVFVE 124
            KC F+GY  + KG++LY+L+T +  I + V+F E
Sbjct: 609 EKCIFMGYSSQSKGYRLYNLKTNKLIISRYVIFYE 643


>GSVIVT01017026001 assembled CDS
          Length = 1273

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 41/71 (57%)

Query: 34   TTGYLINRILSMLLNGRTPYEILFGQVPSYRHIRTFGCLCYAYNLNKDKDKFASRSRKCT 93
            T  Y+INR+ + LL G++P+E+L+G  P Y +   FGC  Y    +   +K + RS  C 
Sbjct: 1198 TATYIINRLPTPLLGGKSPFELLYGYSPHYENFHPFGCRVYPCLRDYMPNKLSPRSIPCI 1257

Query: 94   FIGYKYEKKGW 104
            F+GY    KG+
Sbjct: 1258 FLGYSPSHKGF 1268


>GSVIVT01028612001 assembled CDS
          Length = 3048

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 49/95 (51%)

Query: 30  ECILTTGYLINRILSMLLNGRTPYEILFGQVPSYRHIRTFGCLCYAYNLNKDKDKFASRS 89
           E +  T +++NR  +  +  +TP E      PS  + R FGCL + +  +  + K   +S
Sbjct: 644 EAVNWTVHVLNRSPTFAVQNKTPEEAWGKLKPSVDYFRVFGCLSHVHVPDSKRTKLDDKS 703

Query: 90  RKCTFIGYKYEKKGWKLYDLETREYFIFKDVVFVE 124
             C  +G   E K ++LYD  +++  I +DVVF E
Sbjct: 704 FSCVLLGVSEESKAYRLYDPISQKIIISRDVVFEE 738


>GSVIVT01014104001 assembled CDS
          Length = 1354

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 30   ECILTTGYLINRILSMLLNGRTPYEILFGQVPSYRHIRTFGCLCYAYNLNKDKDKFASRS 89
            E + T  Y++NR+ S  +  +TP+E+  G+ PS RHI  +GC   A   N  + K  SR+
Sbjct: 1002 EALKTAMYILNRVPSKAVP-KTPFELWTGRKPSLRHIHIWGCPAEARIYNPHEKKLDSRT 1060

Query: 90   RKCTFIGYKYEKKGWKLY 107
                FIGY  + KG++ Y
Sbjct: 1061 VSGYFIGYPDKSKGYRFY 1078