Jatropha Genome Database

JcCB0188331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0188331.10 + phase: 2 /pseudo/partial
         (139 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009151001 assembled CDS                                       168   8e-43
GSVIVT01037287001 assembled CDS                                       160   2e-40
GSVIVT01003597001 assembled CDS                                       142   4e-35

>GSVIVT01009151001 assembled CDS
          Length = 900

 Score =  168 bits (425), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 80/108 (74%), Positives = 89/108 (82%)

Query: 21  GVKVEGILRQAAAVDDVKHRIREYEQGKTEFAADEDAHVIGDCVKYFLRELPSSPVPASC 80
           GVK+EGILRQAA VDDV+ RIREYE+GK EF+ DED H+I DCVKY LRELPSSPVPASC
Sbjct: 159 GVKIEGILRQAADVDDVECRIREYEKGKNEFSPDEDPHIIADCVKYVLRELPSSPVPASC 218

Query: 81  CNALLQSFRTDRANRVNNMRVAILENFPEPNRRLLQRYLMSPLSVIGY 128
           CNALL++ RTDR NRVN MR AI E FPEPNRRLLQR LM   +V  +
Sbjct: 219 CNALLEACRTDRNNRVNAMRGAICETFPEPNRRLLQRILMMMQTVASH 266


>GSVIVT01037287001 assembled CDS
          Length = 886

 Score =  160 bits (405), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/100 (73%), Positives = 87/100 (87%), Gaps = 1/100 (1%)

Query: 21  GVKVEGILRQAAAVDDVKHRIREYEQGKTEFAADEDAHVIGDCVKYFLRELPSSPVPASC 80
           G+KVEGILRQ+A V++V  R++EYEQGKTEF ADEDAHV+GDCVK+ LRELPSSPVPASC
Sbjct: 195 GIKVEGILRQSADVEEVDRRVQEYEQGKTEFGADEDAHVVGDCVKHVLRELPSSPVPASC 254

Query: 81  CNALLQSFRTDRAN-RVNNMRVAILENFPEPNRRLLQRYL 119
           C ALL++++ DR + RV+ MR AILE FPEPNRRLLQR L
Sbjct: 255 CTALLEAYKIDRKDARVSAMRSAILETFPEPNRRLLQRIL 294


>GSVIVT01003597001 assembled CDS
          Length = 489

 Score =  142 bits (359), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 81/100 (81%)

Query: 21  GVKVEGILRQAAAVDDVKHRIREYEQGKTEFAADEDAHVIGDCVKYFLRELPSSPVPASC 80
           GVKVEGI RQ+A+VDDV  R+REYEQG  EF+ DED HV+ DC+K+ LRELPSS VPASC
Sbjct: 205 GVKVEGIFRQSASVDDVARRVREYEQGNNEFSPDEDPHVVADCIKHVLRELPSSLVPASC 264

Query: 81  CNALLQSFRTDRANRVNNMRVAILENFPEPNRRLLQRYLM 120
           C+ALL++ RT+R  RVN +R A+ E FPEPN RLL+R L+
Sbjct: 265 CSALLKACRTERGVRVNAIRRALYETFPEPNCRLLKRILL 304