Jatropha Genome Database

JcCB0187931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0187931.10 - phase: 1 /partial
         (229 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009890001 assembled CDS                                       212   1e-55
GSVIVT01036059001 assembled CDS                                       173   7e-44
GSVIVT01033931001 assembled CDS                                       167   4e-42

>GSVIVT01009890001 assembled CDS
          Length = 436

 Score =  212 bits (540), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 115/206 (55%), Positives = 141/206 (68%), Gaps = 28/206 (13%)

Query: 26  RGCDGGGSKELDAHVNRLKAEVESLHAEEHRLDESIRQKQELLRSLEEDENNQRYLFMTE 85
           +G D  G +++D  V RLKAEVE L+AEE RLD+ IR+KQELLR++  DEN Q++LF+TE
Sbjct: 212 KGFDMSGPQKMDNEVTRLKAEVERLYAEECRLDDCIREKQELLRAIAGDENCQKHLFLTE 271

Query: 86  EDITSLPCFQNQTLIAIKAPQASYLEVPDPDEDIGCP--QYKMIVRSNTGPIDLYLLSKY 143
           EDIT+LPCFQNQTLIAIKAPQAS +EVPDPDEDIG    Q+++I+RS TGPIDLYLL   
Sbjct: 272 EDITTLPCFQNQTLIAIKAPQASSVEVPDPDEDIGFSQRQFRIIIRSTTGPIDLYLLRT- 330

Query: 144 NQQHEDVAVKQVNPLTSTSPKCCPHRMETEGLSFEQHYQNNNAEMFNSLYSESSGIQKII 203
                               K   + +E  G +  Q     +A  F+SL SE SGIQKII
Sbjct: 331 --------------------KSLDYSVEDSGCNKLQ-----DAGPFSSLGSEGSGIQKII 365

Query: 204 PSDCDIDDDYWFRSNPEVSTSELWGN 229
           PSD  IDDDYW RS+PEVS ++LW N
Sbjct: 366 PSDFKIDDDYWLRSDPEVSITDLWAN 391


>GSVIVT01036059001 assembled CDS
          Length = 446

 Score =  173 bits (438), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 95/214 (44%), Positives = 132/214 (61%), Gaps = 14/214 (6%)

Query: 26  RGCDGGGSKELDAHVNRLKAEVESLHAEEHRLDESIRQKQELLRSLEEDENNQRYLFMTE 85
           +G D     E+D +V  L+ EVE+L  +E RLD  IR  QE LR L EDENNQ++LF+TE
Sbjct: 188 KGLDVSRPGEVDENVTSLQEEVENLSIQERRLDAQIRDMQERLRDLSEDENNQKWLFVTE 247

Query: 86  EDITSLPCFQNQTLIAIKAPQASYLEVPDPDEDIGCPQ--YKMIVRSNTGPIDLYLLSKY 143
           EDI  LPCFQ +TLIAIKAP  + LEVPDPDE +  PQ  Y++++RS+ GPID+YL+S++
Sbjct: 248 EDIKGLPCFQKETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSSMGPIDVYLVSQF 307

Query: 144 NQQHEDVAVKQVNPLTSTS------PKCCPHRMETEGLSFEQHYQNNNAEMFNSLYSES- 196
            ++ E++   +  P   +S      P       E+ G   E   Q  +A   +S  + S 
Sbjct: 308 EEKFEEINGLEAPPSFPSSSGYNEDPTAAMVTEESRGKEIE--IQGQDAHRMSSDLNASQ 365

Query: 197 ---SGIQKIIPSDCDIDDDYWFRSNPEVSTSELW 227
              SGI KI+PSD D D DYW  S+ +VS +++W
Sbjct: 366 DFVSGIMKIVPSDVDSDADYWLLSDADVSITDMW 399


>GSVIVT01033931001 assembled CDS
          Length = 466

 Score =  167 bits (423), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 96/215 (44%), Positives = 133/215 (61%), Gaps = 17/215 (7%)

Query: 26  RGCDGGGSKELDAHVNRLKAEVESLHAEEHRLDESIRQKQELLRSLEEDENNQRYLFMTE 85
           +G D     E+D  V  L+AEVE+L  EE RLD+ IR+ QE LR L EDENNQ++LF+TE
Sbjct: 208 KGLDVSRPGEVDDDVTILQAEVENLSLEERRLDDHIREMQEKLRDLSEDENNQKWLFVTE 267

Query: 86  EDITSLPCFQNQTLIAIKAPQASYLEVPDPDEDIGCPQ--YKMIVRSNTGPIDLYLLSKY 143
           +DI  LPCFQN+TLIAIKAP  + LEVPDPDE +  PQ  Y++++RS  GPID+YL+S++
Sbjct: 268 DDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQF 327

Query: 144 NQQHEDV---AVKQVNPLTSTS-----PKCCPHRMETEGLSFEQHYQNNNAEMFNSLYSE 195
            ++ E++         PL S+S     P       ++ G   E     +  +M + L + 
Sbjct: 328 EEKFEEMNGTPPPLSFPLASSSGSNENPSTEVVIADSSGKELEPQ---DGYQMCSDLTAS 384

Query: 196 S---SGIQKIIPSDCDIDDDYWFRSNPEVSTSELW 227
                GI KI+P D D D DYW RS+ EVS +++W
Sbjct: 385 QEFIGGIMKIVP-DVDSDADYWLRSDAEVSITDMW 418