Jatropha Genome Database

JcCB0187481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0187481.10 + phase: 0 /partial
         (147 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022249001 assembled CDS                                       210   2e-55

>GSVIVT01022249001 assembled CDS
          Length = 240

 Score =  210 bits (534), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 102/138 (73%), Positives = 122/138 (88%), Gaps = 8/138 (5%)

Query: 1   MAFPSRLLSRSKQLYGSQVILQQDHAIPVRYFAKKADPPSQKGDSPPRLKGDELLKGIFL 60
           MAF SRLLS+SKQLYGSQ+ILQQ HA+PVR+FAK+A        +PP LKGDE+LK IFL
Sbjct: 1   MAFSSRLLSKSKQLYGSQIILQQQHAVPVRFFAKEA--------APPALKGDEMLKNIFL 52

Query: 61  EVKKKYETAVGILKKEKITIAPEDPSAVSQYAKIMKTIREKAGLFSESERIKFTIETQTV 120
           EVKKK+ETA+G+L+KEKITI PEDP+AV+QYAK+MKT+REKA LFSES+RI++TI+T+T 
Sbjct: 53  EVKKKFETAMGVLRKEKITIDPEDPAAVNQYAKVMKTVREKADLFSESQRIQYTIQTRTQ 112

Query: 121 DIPDARTYLLTLKEIRIK 138
            IPDARTYLLTLKEIRIK
Sbjct: 113 GIPDARTYLLTLKEIRIK 130