Jatropha Genome Database

JcCB0186801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0186801.10 + phase: 2 /pseudo/partial
         (348 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015335001 assembled CDS                                        68   6e-12

>GSVIVT01015335001 assembled CDS
          Length = 208

 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 29/41 (70%), Positives = 34/41 (82%)

Query: 305 VQLPTLDKDNSWSLVSHLQQFHPSYAGRGPSNSDKPNEGLK 345
           +QLP LDK+NSW + SH QQFHP YAG+GP NSDK N+GLK
Sbjct: 1   MQLPMLDKNNSWGVASHSQQFHPPYAGKGPPNSDKHNDGLK 41