Jatropha Genome Database

JcCB0186651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0186651.10 - phase: 0 
         (353 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036449001 assembled CDS                                       108   6e-24
GSVIVT01011962001 assembled CDS                                       105   5e-23
GSVIVT01008234001 assembled CDS                                       100   2e-21
GSVIVT01021167001 assembled CDS                                        79   4e-15
GSVIVT01020666001 assembled CDS                                        78   5e-15
GSVIVT01021528001 assembled CDS                                        77   1e-14
GSVIVT01014236001 assembled CDS                                        75   3e-14
GSVIVT01032911001 assembled CDS                                        71   9e-13
GSVIVT01008109001 assembled CDS                                        69   5e-12

>GSVIVT01036449001 assembled CDS
          Length = 273

 Score =  108 bits (269), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 69/102 (67%), Gaps = 5/102 (4%)

Query: 103 FVSAKKPLKKDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKS 162
           F+  K+ +KKDRHSKI T++G R+RRVRLSI+IARKFFDLQDMLGFDKAS+TLEWLL KS
Sbjct: 63  FLPGKRAVKKDRHSKITTAKGPRERRVRLSIKIARKFFDLQDMLGFDKASRTLEWLLMKS 122

Query: 163 KRAIK---RVAHKRXXXXXXXXXXXTCEALSPENGEIAMEEG 201
           K AIK   R+ H              CE +S  N   A E G
Sbjct: 123 KTAIKEVVRMKHSCNEEAKSLSSASECEVVSEMND--AAESG 162


>GSVIVT01011962001 assembled CDS
          Length = 404

 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 49/66 (74%), Positives = 58/66 (87%)

Query: 104 VSAKKPLKKDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSK 163
           V  K+  KKDRHSKI+T+QG RDRR+RLS+QIARKFFDLQD+LGFDKASKT+EWL +KSK
Sbjct: 58  VPRKRTGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDILGFDKASKTIEWLFTKSK 117

Query: 164 RAIKRV 169
            AIK +
Sbjct: 118 AAIKEL 123


>GSVIVT01008234001 assembled CDS
          Length = 366

 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/67 (68%), Positives = 59/67 (88%)

Query: 104 VSAKKPLKKDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSK 163
           +  K+  K+DRHSKI+T++G RDRR+RLS++IARKFFDLQDMLGFDKASKT+EWLL K+K
Sbjct: 131 IMQKRSSKRDRHSKINTARGPRDRRMRLSLEIARKFFDLQDMLGFDKASKTVEWLLIKAK 190

Query: 164 RAIKRVA 170
            AIK ++
Sbjct: 191 SAIKELS 197


>GSVIVT01021167001 assembled CDS
          Length = 382

 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 47/60 (78%)

Query: 111 KKDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAIKRVA 170
           KKDRHSK+ TS+G RDRRVRLS   A +F+D+QD LG+D+ SK ++WL+ K+K AI  +A
Sbjct: 67  KKDRHSKVCTSKGPRDRRVRLSANTAIQFYDVQDRLGYDRPSKAVDWLMEKAKTAIDALA 126


>GSVIVT01020666001 assembled CDS
          Length = 307

 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 49/60 (81%)

Query: 111 KKDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAIKRVA 170
           +KDRHSK++T++G RDRRVRLS   A +F+D+QD LG+D+ SK ++WL+ K+K +I ++A
Sbjct: 23  RKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLA 82


>GSVIVT01021528001 assembled CDS
          Length = 319

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 49/69 (71%)

Query: 102 VFVSAKKPLKKDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSK 161
           +F  ++    KDRHSK+ TS+GLRDRRVRLS+  A +F+DLQD LG+D+ SK +EWL+  
Sbjct: 42  IFRVSRASGGKDRHSKVLTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKA 101

Query: 162 SKRAIKRVA 170
           +  AI  + 
Sbjct: 102 ASDAIAELP 110


>GSVIVT01014236001 assembled CDS
          Length = 300

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 47/60 (78%)

Query: 111 KKDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAIKRVA 170
           +KDRHSK+ T++G RDRRVRLS   A +F+D+QD LG+D+ SK ++WL+ K+K AI  +A
Sbjct: 44  RKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELA 103


>GSVIVT01032911001 assembled CDS
          Length = 465

 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 43/59 (72%)

Query: 112 KDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAIKRVA 170
           KDRHSK+ T +GLRDRRVRLS+  A + +DLQD LG ++ SK ++WLL+ +K  I  + 
Sbjct: 139 KDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELP 197


>GSVIVT01008109001 assembled CDS
          Length = 217

 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 42/59 (71%)

Query: 112 KDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAIKRVA 170
           KDRHSK+ T +GLRDRR+RLS+  A + +DLQD LG  + SK ++WLL  +K  I ++ 
Sbjct: 112 KDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDATKHEIDKLP 170