Jatropha Genome Database

JcCB0186601.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0186601.20 + phase: 0 /partial
         (298 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009899001 assembled CDS                                       415   e-116
GSVIVT01016971001 assembled CDS                                       324   3e-89
GSVIVT01015297001 assembled CDS                                       322   1e-88
GSVIVT01031551001 assembled CDS                                       302   1e-82
GSVIVT01002667001 assembled CDS                                       213   6e-56

>GSVIVT01009899001 assembled CDS
          Length = 411

 Score =  415 bits (1066), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 194/219 (88%), Positives = 210/219 (95%)

Query: 80  MILSYVDSLPSGNEKGLFYALDLGGTNFRVLRVQLGGKEERVVATEFEQVSIPQELMFGT 139
           MILSYVD+ P+GNEKGLFYALDLGGTNFRVLRVQLGGK+ERV+ATEFEQV+IPQELMFGT
Sbjct: 1   MILSYVDTFPTGNEKGLFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVTIPQELMFGT 60

Query: 140 SEELFDFIASGLANFAQKEGGKFHLPHGREREIGFTFSFPVKQTSVDSGILIKWTKGFAV 199
           SEELFDFIA GLANFA+KEGGKFHLP GR+REIGFTFSFPVKQTS+DSGIL+KWTKGFAV
Sbjct: 61  SEELFDFIACGLANFAKKEGGKFHLPSGRKREIGFTFSFPVKQTSIDSGILMKWTKGFAV 120

Query: 200 SGTAGRDVVACLNEAMKRRGLDMRVSALVNDTVGTLAGARYWDNDVMVAVILGTGTNACY 259
           SGTAGRDVVACLNEAM+R+GLDM+VSALVNDTVGTLAGARYWD+DVMVAVILGTGTNACY
Sbjct: 121 SGTAGRDVVACLNEAMERQGLDMQVSALVNDTVGTLAGARYWDDDVMVAVILGTGTNACY 180

Query: 260 VERIDAIPKLQGPKSSSRRTIVNTEWGAFSTGIPLTEFD 298
           VER D IPKLQG  SSS RTI++TEWGAFS G+PLTEFD
Sbjct: 181 VERTDVIPKLQGQMSSSGRTIISTEWGAFSNGLPLTEFD 219


>GSVIVT01016971001 assembled CDS
          Length = 448

 Score =  324 bits (831), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 155/238 (65%), Positives = 194/238 (81%), Gaps = 1/238 (0%)

Query: 62  MTADMRAGLEADGASDLKMILSYVDSLPSGNEKGLFYALDLGGTNFRVLRVQLGGKEERV 121
           MT +M AGL ++G S LKM++SYVD+LP+G+EKGLFYALDLGGTNFRVLRVQLGG++ R+
Sbjct: 1   MTVEMHAGLASEGGSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGRDGRI 60

Query: 122 VATEFEQVSIPQELMFGTSEELFDFIASGLANFAQKEGGKFHLPHGREREIGFTFSFPVK 181
           V  EF +VSIP  LM  +++ LFD+IA+ LA F  KEG  FHLP GR+RE+GFTFSFPV 
Sbjct: 61  VNQEFVEVSIPPNLMVKSTDALFDYIATELAKFVAKEGPGFHLPPGRQRELGFTFSFPVM 120

Query: 182 QTSVDSGILIKWTKGFAVSGTAGRDVVACLNEAMKRRGLDMRVSALVNDTVGTLAGARYW 241
           QTS++SG LIKWTKGF++  T GRDVVA L +A++R+G+DMRVSALVNDT+GTLAG RY+
Sbjct: 121 QTSINSGNLIKWTKGFSIDDTIGRDVVAELTKAIERKGVDMRVSALVNDTIGTLAGGRYF 180

Query: 242 DNDVMVAVILGTGTNACYVERIDAIPKLQGPKSSSRRTIVNTEWGAF-STGIPLTEFD 298
           ++DV+VAVILGTG+NA YVER  AIPK QG    S   ++N EWG F S+ +PLTE+D
Sbjct: 181 NDDVVVAVILGTGSNAAYVERAQAIPKWQGLLPKSGDMVINMEWGNFRSSHLPLTEYD 238


>GSVIVT01015297001 assembled CDS
          Length = 436

 Score =  322 bits (826), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 154/238 (64%), Positives = 188/238 (78%), Gaps = 1/238 (0%)

Query: 62  MTADMRAGLEADGASDLKMILSYVDSLPSGNEKGLFYALDLGGTNFRVLRVQLGGKEERV 121
           MT +M AGL ++G S LKMI+SYVD+LP+G+EKGLFYALDLGGTNFRVLRVQLGGK++RV
Sbjct: 1   MTVEMHAGLASEGGSKLKMIISYVDNLPTGDEKGLFYALDLGGTNFRVLRVQLGGKDKRV 60

Query: 122 VATEFEQVSIPQELMFGTSEELFDFIASGLANFAQKEGGKFHLPHGREREIGFTFSFPVK 181
           V  EFE+VSIP  LM G+S+ LFD+IA+ LA F   EG   H+  GR+RE+GFTFSFPV+
Sbjct: 61  VKQEFEEVSIPPHLMVGSSDALFDYIAAALAKFVATEGEGLHVSPGRQRELGFTFSFPVR 120

Query: 182 QTSVDSGILIKWTKGFAVSGTAGRDVVACLNEAMKRRGLDMRVSALVNDTVGTLAGARYW 241
           Q+S+ SG LIKWTKGF++    G+DVV  L +AM+R GLDMRVSALVNDT+GTLAG RY+
Sbjct: 121 QSSISSGSLIKWTKGFSIEDAVGQDVVGELTKAMERIGLDMRVSALVNDTIGTLAGGRYY 180

Query: 242 DNDVMVAVILGTGTNACYVERIDAIPKLQGPKSSSRRTIVNTEWGAF-STGIPLTEFD 298
           D DV+ AVILGTGTNA YVER  +IPK  G    S   ++N EWG F S+ +PLTE+D
Sbjct: 181 DQDVVAAVILGTGTNAAYVERAQSIPKWHGLLPKSGDMVINMEWGNFRSSHLPLTEYD 238


>GSVIVT01031551001 assembled CDS
          Length = 523

 Score =  302 bits (773), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 148/260 (56%), Positives = 187/260 (71%), Gaps = 1/260 (0%)

Query: 40  ILTKLQKECATPLPVLRQVADAMTADMRAGLEADGASDLKMILSYVDSLPSGNEKGLFYA 99
           +L  L++ C T +  LRQV DAM  +M AGL ++G S LKM+L++VD LP+G+E+G +YA
Sbjct: 40  VLRDLEEACETSVGRLRQVVDAMAVEMHAGLASEGGSKLKMLLTFVDKLPNGSERGKYYA 99

Query: 100 LDLGGTNFRVLRVQLGGKEERVVATEFEQVSIPQELMFGTSEELFDFIASGLANFAQKEG 159
           LDLGGTNFRVL++QLGGK   +++ + E+  IPQ+LM  TSE+LFDFIAS L  F ++E 
Sbjct: 100 LDLGGTNFRVLQIQLGGKTSSILSCDVERQPIPQDLMTSTSEDLFDFIASSLKQFVEREA 159

Query: 160 GKFHLPHGREREIGFTFSFPVKQTSVDSGILIKWTKGFAVSGTAGRDVVACLNEAMKRRG 219
                   + RE+GFTFSFPVKQTSV SGILIKWTK F+V    G+DV  CL  AM R G
Sbjct: 160 QNSEFSPVKRRELGFTFSFPVKQTSVSSGILIKWTKRFSVKDMVGKDVSECLQHAMTRNG 219

Query: 220 LDMRVSALVNDTVGTLAGARYWDNDVMVAVILGTGTNACYVERIDAIPKLQGPKSSSRRT 279
           LDMRV+ LVNDTVGTLA   Y D D + AVI+GTGTNACY+ER DAI K QG  ++S   
Sbjct: 220 LDMRVAVLVNDTVGTLALGHYNDPDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGGM 279

Query: 280 IVNTEWGAF-STGIPLTEFD 298
           +VN EWG F S+ +P T +D
Sbjct: 280 VVNMEWGNFWSSHLPRTSYD 299


>GSVIVT01002667001 assembled CDS
          Length = 479

 Score =  213 bits (543), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 111/264 (42%), Positives = 163/264 (61%), Gaps = 6/264 (2%)

Query: 40  ILTKLQKECATPLPVLRQVADAMTADMRAGLEADGASDLKMILSYVDSLPSGNEKGLFYA 99
           IL K  ++CATP+  L  VADA+ +DM   L +   + L M +SYV SLPSG+E+GL+Y 
Sbjct: 26  ILRKFARDCATPVSKLWLVADALVSDMNEALTSQETTTLNMPISYVASLPSGDEEGLYYG 85

Query: 100 LDLGGTNFRVLRVQLGGKEERVVATEFEQVSIPQELMFGTSEELFDFIASGLANFAQKEG 159
           L+L G+NF +LR +L GK E +     E+VSIP  +M GTS+ELFD+IA  LA F  +  
Sbjct: 86  LNLRGSNFLILRARLRGKNESISELHREEVSIPSNVMGGTSQELFDYIALELAKFISEHE 145

Query: 160 GKFHLPHGREREIGFTFSFPVKQTSVDSGILIKWTKGFAVSGT---AGRDVVACLNEAMK 216
                   R++ +GF  S+PV Q +  SG  IKW + F+V+ T   AG+ + +  N A++
Sbjct: 146 VTTDDTPDRQKALGFIVSYPVDQAAASSGAAIKW-RSFSVTDTVECAGKALASNFNRALE 204

Query: 217 RRGLDMRVSAL-VNDTVGTLAGARYWDNDVMVAVILGTGTNACYVERIDAIPKLQGPKSS 275
           + G+++RV  L V D +G LAG RY++ D + A+ LG  T A YVE   A+P+ Q   + 
Sbjct: 205 KHGVNLRVLQLQVEDAIGHLAGGRYYNRDTVAAITLGMATTAAYVEPTQAVPEYQSSSNK 264

Query: 276 SRRTIVNTEWGAF-STGIPLTEFD 298
           S   +++ +WG F S  +P+TEFD
Sbjct: 265 SSEMVISMDWGNFNSCHLPITEFD 288