Jatropha Genome Database

JcCB0186601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0186601.10 - phase: 0 
         (63 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009898001 assembled CDS                                        75   7e-15
GSVIVT01018786001 assembled CDS                                        69   5e-13
GSVIVT01023272001 assembled CDS                                        45   1e-05

>GSVIVT01009898001 assembled CDS
          Length = 192

 Score = 74.7 bits (182), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 37/48 (77%), Positives = 44/48 (91%), Gaps = 1/48 (2%)

Query: 1  MDTEEGVVVIKRAEIDTRPPFRSVKEAVTLFGEKVLAGELYA-NKLKE 47
          M+ E+GVV+I+RAEIDTR PFRSVKEAV LFGE+VLAGE+YA NK+KE
Sbjct: 1  MEGEDGVVMIRRAEIDTRAPFRSVKEAVVLFGERVLAGEVYASNKIKE 48


>GSVIVT01018786001 assembled CDS
          Length = 522

 Score = 68.6 bits (166), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/37 (89%), Positives = 35/37 (94%)

Query: 12 RAEIDTRPPFRSVKEAVTLFGEKVLAGELYANKLKEV 48
          RAEIDTR PFRSVKEAV LFGE+VLAGELYANKLKE+
Sbjct: 3  RAEIDTRAPFRSVKEAVMLFGERVLAGELYANKLKEM 39


>GSVIVT01023272001 assembled CDS
          Length = 209

 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 27/32 (84%)

Query: 13 AEIDTRPPFRSVKEAVTLFGEKVLAGELYANK 44
          + +DT  PFRSVKEAV +FGE++LAGEL++ K
Sbjct: 16 SSVDTSRPFRSVKEAVAIFGERLLAGELHSPK 47