Jatropha Genome Database

JcCB0186451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0186451.10 - phase: 0 
         (301 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037764001 assembled CDS                                       413   e-116

>GSVIVT01037764001 assembled CDS
          Length = 310

 Score =  413 bits (1061), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/297 (67%), Positives = 238/297 (80%), Gaps = 2/297 (0%)

Query: 5   LVLSWGSHIMARSFCDYSIKLRSFNENERFGGVKVRSSNFKPSTR-RISLCKNKLVDFDE 63
           +  S GSH + R+    +++   F+  ER   +  + S  KP    RI +CK + V+F+E
Sbjct: 1   MAASLGSHTLLRNSHQRTVRFAPFSGGERRQTLSFKFSELKPHNPWRILVCKGEFVEFEE 60

Query: 64  RTSPNEVRREIERCYNLIQRLGRGVVYLGSSRMGPDHPHYLQVLELGREVAKLLDCTSWT 123
           RTSPNEVR+EIE+CY LI +LGRGVVYLGSSRMGPDH HYLQ LELGREVA LLDCTSWT
Sbjct: 61  RTSPNEVRKEIEQCYELINKLGRGVVYLGSSRMGPDHSHYLQALELGREVANLLDCTSWT 120

Query: 124 GAGPGLMDAAIKGALEAGKPVGGFKIAKEAGEWTASNFHAYLPSETYLTCRFFSARKHGL 183
           GAGPGLMDAA KGAL+AGKPVGGFKI +EAG+ TA +FH YLPSETY TCRFFSARKHGL
Sbjct: 121 GAGPGLMDAASKGALQAGKPVGGFKIGREAGQQTALSFHPYLPSETYFTCRFFSARKHGL 180

Query: 184 VDAAVRNNSSDKTAVVALPGGIGTLDEMFEILALIQLERIGSELPVPFIVMNYDSFYQKL 243
           VDAAVR+ + D+TAVVALPGGIGTLDE+FEILALIQL+RIGSELPVPF++MNYDSFY KL
Sbjct: 181 VDAAVRSCNCDRTAVVALPGGIGTLDEVFEILALIQLQRIGSELPVPFLLMNYDSFYSKL 240

Query: 244 LDFIQNCEDWGTVSRGEVASLWKVCNNNSDALAYLTDFYNIHSSSDEDRHDKKLTTA 300
           LDF+ + E WGTV +GEV SLWKVCNNNS+AL+YL +FY++    D  + +  L TA
Sbjct: 241 LDFLSDSECWGTVCKGEVESLWKVCNNNSEALSYLAEFYDL-PLGDNGKCETGLATA 296