Jatropha Genome Database

JcCB0186021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0186021.10 + phase: 0 
         (82 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031151001 assembled CDS                                       162   4e-41
GSVIVT01017756001 assembled CDS                                       154   1e-38

>GSVIVT01031151001 assembled CDS
          Length = 82

 Score =  162 bits (409), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 75/82 (91%), Positives = 78/82 (95%)

Query: 1  MQNDEGQNMDLYIPRKCSATNRLITSKDHASVQINIGHLDANGNYTGQFTTFALCGFVRA 60
          MQN+EGQNMDLYIPRKCSATNRLITSKDHASVQINIGHLD +G YTGQFTTFALCGFVRA
Sbjct: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHASVQINIGHLDESGTYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWLKKKVELRQQ 82
          QGDADSALDRLW KKK E+RQQ
Sbjct: 61 QGDADSALDRLWQKKKAEVRQQ 82


>GSVIVT01017756001 assembled CDS
          Length = 82

 Score =  154 bits (388), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 70/82 (85%), Positives = 77/82 (93%)

Query: 1  MQNDEGQNMDLYIPRKCSATNRLITSKDHASVQINIGHLDANGNYTGQFTTFALCGFVRA 60
          MQN+EGQNMDLYIPRKCSATNRLITSKDHASVQINIGH+D +G +TGQF+TFALCGFVRA
Sbjct: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHASVQINIGHVDEDGVFTGQFSTFALCGFVRA 60

Query: 61 QGDADSALDRLWLKKKVELRQQ 82
          QGDADSA+DRLW KKK E+RQ 
Sbjct: 61 QGDADSAVDRLWQKKKAEVRQH 82