Jatropha Genome Database

JcCB0185581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0185581.10 + phase: 0 /partial
         (265 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022068001 assembled CDS                                       341   2e-94
GSVIVT01005613001 assembled CDS                                        73   1e-13
GSVIVT01024158001 assembled CDS                                        66   2e-11

>GSVIVT01022068001 assembled CDS
          Length = 316

 Score =  341 bits (875), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 161/185 (87%), Positives = 170/185 (91%)

Query: 71  SSCCLDPVGRYLNGESRVERAWAHWTKLGRPKLIVAPMVDNSELPFRMLCRKYGAEAAYT 130
            S   D   R L GESR+ERAWAHW KLG+PKLIVAPMVDNSELPFRMLCRKYGA+AAYT
Sbjct: 38  QSSSADWPSRCLTGESRIERAWAHWKKLGQPKLIVAPMVDNSELPFRMLCRKYGAQAAYT 97

Query: 131 PMLHSRIFTENEKYRDQEFTTCKEDRPLFVQFCANDPEILLEAARRVEPYCDYVDINLGC 190
           PMLHSRIF+ENEKYR QEFTTCKEDRPLFVQFCANDP+ LLEAA+RVEPYCDYVDINLGC
Sbjct: 98  PMLHSRIFSENEKYRSQEFTTCKEDRPLFVQFCANDPDTLLEAAQRVEPYCDYVDINLGC 157

Query: 191 PQRIARRGNYGAFLMDKLPLVKSLVEKLTLNLNVPVSCKIRVFPKLEDTINYARMLEEAG 250
           PQRIARRGNYGAFLMD LPLVKSLVEKL LNL+VPVSCKIRVFP L+DTINYARMLE+AG
Sbjct: 158 PQRIARRGNYGAFLMDNLPLVKSLVEKLALNLHVPVSCKIRVFPNLQDTINYARMLEDAG 217

Query: 251 CSLLA 255
           CSLLA
Sbjct: 218 CSLLA 222


>GSVIVT01005613001 assembled CDS
          Length = 160

 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 58/95 (61%)

Query: 165 NDPEILLEAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDKLPLVKSLVEKLTLNLNV 224
           ++ E  L AA+ V      VDIN+GCP+  +  G  GA L+ +  L+  ++  L  NL++
Sbjct: 4   SNAERALTAAQIVCKDVAAVDINMGCPKSFSISGGMGAALLTRPELIHDILTILKRNLDI 63

Query: 225 PVSCKIRVFPKLEDTINYARMLEEAGCSLLAVHGR 259
           PV+CKIR+    ++T+  A+ +E+ G + LAVHGR
Sbjct: 64  PVTCKIRLLKSSQETVELAQQIEKTGVAALAVHGR 98


>GSVIVT01024158001 assembled CDS
          Length = 678

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 80/169 (47%), Gaps = 4/169 (2%)

Query: 100 RPKLIVAPMVDNSELPFRMLCRKYGAEAAYTPMLHSRIFTENEKYRDQEFTTCKEDRPLF 159
           R KL +AP+     LPFR +C+  GA+     M       + +            +    
Sbjct: 324 REKLYLAPLTTVGNLPFRRVCKMLGADVTCGEMAMCTNLLQGQASEWALLRRHSAEDLFG 383

Query: 160 VQFCANDPEILLEAARRVEPYC--DYVDINLGCPQRIARRGNYGAFLMDKLPLVKSLVEK 217
           VQ C   P+ +      ++  C  D++DIN+GCP  I      G+ L+ K   +K+++E 
Sbjct: 384 VQICGAYPDTVARTVELIDQECEVDFIDINMGCPIDIVVNKGAGSALLTKPMRMKNIIEA 443

Query: 218 LTLNLNVPVSCKIRV-FPKLEDTIN-YARMLEEAGCSLLAVHGRTRDEK 264
            +  ++ P++ K+R  F +  + ++     + + G +++ +HGR+R ++
Sbjct: 444 ASGIVDKPITVKVRTGFLEGRNRVDSLIADIGQWGANVVTIHGRSRQQR 492