Jatropha Genome Database

JcCB0183891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0183891.10 - phase: 0 /partial
         (344 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022056001 assembled CDS                                       542   e-155

>GSVIVT01022056001 assembled CDS
          Length = 477

 Score =  542 bits (1397), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 258/343 (75%), Positives = 288/343 (83%), Gaps = 11/343 (3%)

Query: 1   MVHAPFALLPATFPESHWNLACEVAPIFNELVDRVSLDGKFLQDSLSRTKKVDVFTSRLL 60
           MVHAPFALLP +FPESHW  ACE+ PIFNELVDRVSLD KFLQ++LSRTKKVD FTSRLL
Sbjct: 32  MVHAPFALLPMSFPESHWQQACELTPIFNELVDRVSLDWKFLQEALSRTKKVDSFTSRLL 91

Query: 61  DIHSKMLEINKFEDIRLGLHRSDYMLDEETKSLLQIELNTISASFPGLSCVISELHRSLL 120
           DIHSKM E+NK E+IRLGLHRSDYMLDE+TK LLQIELNTIS+SFPGLSC+++ELHRSLL
Sbjct: 92  DIHSKMQEMNKKEEIRLGLHRSDYMLDEQTKLLLQIELNTISSSFPGLSCLVTELHRSLL 151

Query: 121 KHYGEHLALDSKRIPTNXXXXXXXXXXXXXWSEYNNPRAVVMVVVQPQEHNMYDQHWLCA 180
            HYG+HL LDSKRIP N             W EYNNPRA+VM VVQ +E NMYDQHWL  
Sbjct: 152 NHYGKHLGLDSKRIPGNSAVTQFAEALAQAWKEYNNPRALVMFVVQTEERNMYDQHWLST 211

Query: 181 ILKEKYPF-----------HLYNTYNVTAIRKTLAEIDEEGELLPDGTLLVDHQAIAVAY 229
            +KE+YPF            LYNT++VT IRKTLAEID EG+LLPDGTL V  Q +AV Y
Sbjct: 212 AMKERYPFESFQRAPMFFPQLYNTHDVTTIRKTLAEIDAEGKLLPDGTLTVGGQPVAVIY 271

Query: 230 FRAGYAPTDFPSEAEWRARLLVEQSLAIKCPSISYHLAGTKKIQQELAKPNVLERFLDNK 289
           FRAGYAPTD+PSE+EWRARL++EQS A+KCPSISYHLAGTKKIQQELAKPNVLERFL+NK
Sbjct: 272 FRAGYAPTDYPSESEWRARLIMEQSSAVKCPSISYHLAGTKKIQQELAKPNVLERFLENK 331

Query: 290 EDTAKLRKCFAGLWSLDESDIIKRAIERPELFVMKPQREGGGT 332
           +D AKLRKCFAGLWSLD+S+IIK AIERPE+FVMKPQREGGG 
Sbjct: 332 DDIAKLRKCFAGLWSLDDSNIIKEAIERPEVFVMKPQREGGGN 374