Jatropha Genome Database

JcCB0183721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0183721.10 - phase: 2 /partial
         (310 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003913001 assembled CDS                                       466   e-132

>GSVIVT01003913001 assembled CDS
          Length = 486

 Score =  466 bits (1198), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 227/331 (68%), Positives = 261/331 (78%), Gaps = 22/331 (6%)

Query: 1   LWSSFFTAAFSVFETYRESPPTTSEKKG-SHTRNNGWTSAVKKIVAGGSMRRIHERVLGP 59
           LWSS F +AFSVFET  ES P+ SEKK   + RNNGWT+AV+K+V G SMRRI ERVLG 
Sbjct: 38  LWSSVFASAFSVFETNSESSPSASEKKAIDNGRNNGWTTAVRKVVTGVSMRRIQERVLGT 97

Query: 60  SRTGISNTTSEIWLLGVCYKISQDGSNADAATS---------------------FDAIGD 98
           S+TGIS++TS+IWLLG+CYKISQ+ S+  A++S                     F+AIGD
Sbjct: 98  SKTGISSSTSDIWLLGLCYKISQEESSNHASSSNGLAEFEQDFSSRILMTYRKGFEAIGD 157

Query: 99  SKFTSDVGWGCMLRSSQMLVAQALLFHQLGRSWRKPIQKPLDQKYVEILHLFGDSEASPF 158
           SK TSDV WGCMLRSSQMLVAQALL H++GRSWRK   KP+DQ Y+EILH FGDS+AS F
Sbjct: 158 SKLTSDVNWGCMLRSSQMLVAQALLLHRMGRSWRKTSHKPMDQDYIEILHHFGDSKASAF 217

Query: 159 SIHNLIHAGKAYGLAAGSWVGPYAMCRSWELLARCKREENNLEHEALPMAVYVVSGDEDG 218
           SIHN++ AGKAYGLAAGSWVGPYAMCRSWE LAR KREE +LE ++LPMA+Y+VSGDEDG
Sbjct: 218 SIHNILQAGKAYGLAAGSWVGPYAMCRSWETLARSKREETDLECQSLPMAIYIVSGDEDG 277

Query: 219 ERGGAPVVCIEDASRHCLDFSRGQANWTPIXXXXXXXXXXEKVNLRYIPSLQATLTFPQS 278
           ERGGAPVV IE+ASRHCL+FS+GQ +WTPI          EKVN RYIPSL AT TFPQS
Sbjct: 278 ERGGAPVVYIEEASRHCLEFSKGQVDWTPILLLVPLVLGLEKVNPRYIPSLAATFTFPQS 337

Query: 279 LGIMGGKPGASTYIVGVQDDNAFYLDPHGVQ 309
           LGI+GGKPGASTYIVGVQD+ AFYLDPH  Q
Sbjct: 338 LGILGGKPGASTYIVGVQDEKAFYLDPHEAQ 368