Jatropha Genome Database

JcCB0181921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0181921.10 - phase: 0 /pseudo
         (110 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023350001 assembled CDS                                        89   4e-19
GSVIVT01008734001 assembled CDS                                        73   3e-14
GSVIVT01005195001 assembled CDS                                        71   1e-13
GSVIVT01019879001 assembled CDS                                        48   1e-06

>GSVIVT01023350001 assembled CDS
          Length = 842

 Score = 89.0 bits (219), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 50/70 (71%), Gaps = 1/70 (1%)

Query: 18 TSVEPSFLHGELDLWIIEAKSLPNMDLPAEHIRRCFTVFGSCSDPCGQKGVKHSGKNSMI 77
           S E  FLHGELDLWI+EAKSLPNMDL  E +RRCF +FGSC+ P   +    S  +S+I
Sbjct: 18 VSGEAVFLHGELDLWILEAKSLPNMDLATERVRRCFNMFGSCTSPFKIRHKHSSKHHSII 77

Query: 78 TSDPYC-ICL 86
          TSDPY  +CL
Sbjct: 78 TSDPYVSVCL 87


>GSVIVT01008734001 assembled CDS
          Length = 823

 Score = 72.8 bits (177), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/66 (57%), Positives = 47/66 (71%), Gaps = 6/66 (9%)

Query: 24 FLHGELDLWIIEAKSLPNMDLPAEHIRRCFTVFGSCSDPC--GQKGVKHSGKNSMITSDP 81
          +LHG+LDL IIEA+ LPNMDL +E IRRCFT F SC  P   G+K  +H   + +ITSDP
Sbjct: 10 YLHGDLDLNIIEARYLPNMDLMSERIRRCFTAFDSCRAPFSGGRKKGRH---HKIITSDP 66

Query: 82 YC-ICL 86
          Y  +CL
Sbjct: 67 YVTVCL 72


>GSVIVT01005195001 assembled CDS
          Length = 1607

 Score = 70.9 bits (172), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/77 (48%), Positives = 49/77 (63%), Gaps = 8/77 (10%)

Query: 17  TTSVEPSFLHGELDLWIIEAKSLPNMDLPAEHIRRCFTVFGSCSDPC-----GQKGVKHS 71
           T S    +LHG+LDL I++A+ LPNMDL  EH+RRCFT+  +C  P      G K + H 
Sbjct: 676 TASQRVIYLHGDLDLKILKARDLPNMDLVTEHVRRCFTLCDACKTPSAGKDPGDKRLDHH 735

Query: 72  GKNSMITSDPYC-ICLP 87
            K  +ITSDPY  +C+P
Sbjct: 736 RK--IITSDPYVTVCVP 750



 Score = 53.1 bits (126), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 11/72 (15%)

Query: 24  FLHGELDLWIIEAKSLPNMDLPAEHIRRCFTVFGSC------SDPCGQK-GVKHSGKNSM 76
           +L+G+LDL I+EA+ LPNMDL A ++ RC   F SC      S P  Q+ G +     ++
Sbjct: 395 YLNGDLDLKILEARHLPNMDLLALNLSRC---FASCEARKRPSSPDRQRPGDRKDRHTNI 451

Query: 77  ITSDPYC-ICLP 87
           ITSDPY  +C+P
Sbjct: 452 ITSDPYVKVCVP 463


>GSVIVT01019879001 assembled CDS
          Length = 839

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 16/78 (20%)

Query: 5  SPNSQITPYTGATTSVEPSFLHGELDLWIIEAKSLPNMDLPAEHIRRCFTVFGSCSDPCG 64
          S   +I P+  A  S++   LHG LD+W+ EAK+LPNMD+    +   F  F        
Sbjct: 16 SQGQEIVPFPTAKGSLKFFLLHGNLDIWVKEAKTLPNMDMFHRSLSDMFGRFSP------ 69

Query: 65 QKGVKHSGKNSMITSDPY 82
                      ITSDPY
Sbjct: 70 ----------HKITSDPY 77