Jatropha Genome Database

JcCB0181751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0181751.10 + phase: 0 /partial
         (217 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015311001 assembled CDS                                       288   1e-78
GSVIVT01016997001 assembled CDS                                       286   4e-78
GSVIVT01035291001 assembled CDS                                       258   1e-69
GSVIVT01013039001 assembled CDS                                       202   1e-52
GSVIVT01018377001 assembled CDS                                       110   6e-25
GSVIVT01026824001 assembled CDS                                        99   2e-21

>GSVIVT01015311001 assembled CDS
          Length = 591

 Score =  288 bits (737), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 137/168 (81%), Positives = 153/168 (91%), Gaps = 1/168 (0%)

Query: 50  MESSLQEIRDGASVLDFDSDKATVTGGVRDVYGEDTATEDQLVTPWSLSVASGYSLLRDP 109
           MES+L++IRDGASVLD D  KATV GGV D+YGED ATEDQLVTPW++SVASGYSLLRDP
Sbjct: 1   MESTLKDIRDGASVLDLDP-KATVGGGVEDLYGEDFATEDQLVTPWTVSVASGYSLLRDP 59

Query: 110 HHNKGLAFNDKERNAHYLRGLLPPAVVSQELQVKKMMHIIRQYQFPLQKYMAMMDLQERN 169
            HNKGLAFNDKER+AHYL GLLPP V +QELQ +K+M+ IRQYQ PLQKYMAMMDLQERN
Sbjct: 60  RHNKGLAFNDKERDAHYLCGLLPPVVSTQELQERKLMNSIRQYQVPLQKYMAMMDLQERN 119

Query: 170 EKLFYKLLIEHVEEMLPIVYTPTVGEACQKYGSIFGRPQGLYISLNEK 217
           E+LFYKLLI++VEE+LP+VYTPTVGEACQKYGSIF RPQGLYISL EK
Sbjct: 120 ERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEK 167


>GSVIVT01016997001 assembled CDS
          Length = 640

 Score =  286 bits (733), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 138/186 (74%), Positives = 162/186 (87%), Gaps = 4/186 (2%)

Query: 35  VVALNPNR---DRNGSVVMESSLQEIRDGASVLDFDSDKATVTGGVRDVYGEDTATEDQL 91
           V+AL  N    + N S VMES+L+E+RDG +VL+ DS K+ V+GGVRDV GED ATEDQ+
Sbjct: 32  VLALGSNGRAGELNVSAVMESTLKELRDGNTVLEVDS-KSAVSGGVRDVQGEDAATEDQI 90

Query: 92  VTPWSLSVASGYSLLRDPHHNKGLAFNDKERNAHYLRGLLPPAVVSQELQVKKMMHIIRQ 151
           VTPW+++VASGYSLLR+PHHNKGLAF +KER+ HYLRGLLPPAVVSQ+LQVKK+M  IRQ
Sbjct: 91  VTPWTITVASGYSLLRNPHHNKGLAFTEKERDHHYLRGLLPPAVVSQDLQVKKLMANIRQ 150

Query: 152 YQFPLQKYMAMMDLQERNEKLFYKLLIEHVEEMLPIVYTPTVGEACQKYGSIFGRPQGLY 211
           Y  PLQKYMAMMDLQERNEKLFYKLL+++VEE+LP+VYTPTVGEACQKYG I  RPQGL+
Sbjct: 151 YTVPLQKYMAMMDLQERNEKLFYKLLMDNVEELLPVVYTPTVGEACQKYGGILRRPQGLF 210

Query: 212 ISLNEK 217
           ISLNEK
Sbjct: 211 ISLNEK 216


>GSVIVT01035291001 assembled CDS
          Length = 575

 Score =  258 bits (660), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 115/143 (80%), Positives = 135/143 (94%)

Query: 75  GGVRDVYGEDTATEDQLVTPWSLSVASGYSLLRDPHHNKGLAFNDKERNAHYLRGLLPPA 134
           GGV D+YGED+ATEDQLVTPW++SVASGY+LLRDPHHNKGLAF + ER+AHYLRGLLPPA
Sbjct: 9   GGVEDIYGEDSATEDQLVTPWTVSVASGYTLLRDPHHNKGLAFTENERDAHYLRGLLPPA 68

Query: 135 VVSQELQVKKMMHIIRQYQFPLQKYMAMMDLQERNEKLFYKLLIEHVEEMLPIVYTPTVG 194
           V++Q+LQ K++MH +RQY+ PLQ+YMAMMDLQERNE+LFYKLLI++VEE+LP+VYTPTVG
Sbjct: 69  VLNQDLQEKRLMHNLRQYKVPLQRYMAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVG 128

Query: 195 EACQKYGSIFGRPQGLYISLNEK 217
           EACQKYGSIF RPQGLYISL EK
Sbjct: 129 EACQKYGSIFRRPQGLYISLKEK 151


>GSVIVT01013039001 assembled CDS
          Length = 432

 Score =  202 bits (513), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 89/113 (78%), Positives = 105/113 (92%)

Query: 100 ASGYSLLRDPHHNKGLAFNDKERNAHYLRGLLPPAVVSQELQVKKMMHIIRQYQFPLQKY 159
            SGY+LLRDPHHNKGLAF +KER+AHYLRGLLPPAV++Q+LQ K++MH +RQY+ PLQ+Y
Sbjct: 40  TSGYTLLRDPHHNKGLAFTEKERDAHYLRGLLPPAVLNQDLQEKRLMHNLRQYKVPLQRY 99

Query: 160 MAMMDLQERNEKLFYKLLIEHVEEMLPIVYTPTVGEACQKYGSIFGRPQGLYI 212
           MAMMD QERNE+LFYKLLI++VEE+LP+VYTPTVGEACQKYGSIF RPQ LYI
Sbjct: 100 MAMMDFQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQSLYI 152


>GSVIVT01018377001 assembled CDS
          Length = 625

 Score =  110 bits (274), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 78/123 (63%), Gaps = 10/123 (8%)

Query: 105 LLRDPHHNKGLAFNDKERNAHYLRGLLPPAVVSQELQVKKMMHIIRQYQ----------F 154
           +L DP  NKG AF+  ER+   LRGLLPP V+S E+Q+++ M  +++ +          +
Sbjct: 51  ILHDPWFNKGTAFSMTERDRLDLRGLLPPTVMSPEMQIERFMVDLKRLEVNARDGPSDPY 110

Query: 155 PLQKYMAMMDLQERNEKLFYKLLIEHVEEMLPIVYTPTVGEACQKYGSIFGRPQGLYISL 214
            L K+  +  L +RNE ++YK+LI ++EE  PIVYTPTVG  CQ Y  +F RP+G+Y S 
Sbjct: 111 ALAKWRILNRLHDRNETMYYKVLINNIEEYAPIVYTPTVGLVCQNYSGLFRRPRGMYFSA 170

Query: 215 NEK 217
            ++
Sbjct: 171 ADR 173


>GSVIVT01026824001 assembled CDS
          Length = 605

 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 71/126 (56%), Gaps = 10/126 (7%)

Query: 102 GYSLLRDPHHNKGLAFNDKERNAHYLRGLLPPAVVSQELQVKKMMHIIRQYQ-------- 153
           G  +L DP  NK   F   ER+   LRGLLPP V+S E Q  + M   R  +        
Sbjct: 34  GADILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEHQYARFMESYRSLEKNTLGQPD 93

Query: 154 --FPLQKYMAMMDLQERNEKLFYKLLIEHVEEMLPIVYTPTVGEACQKYGSIFGRPQGLY 211
               L K+  +  L +RNE L+Y++LI+++++  PI+YTPTVG  CQ Y  +F RP+G+Y
Sbjct: 94  SVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMY 153

Query: 212 ISLNEK 217
            S  +K
Sbjct: 154 FSGKDK 159