Jatropha Genome Database

JcCB0181351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0181351.10 - phase: 2 /partial
         (160 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003552001 assembled CDS                                       139   7e-34
GSVIVT01031805001 assembled CDS                                       123   3e-29
GSVIVT01037751001 assembled CDS                                       101   2e-22
GSVIVT01003340001 assembled CDS                                       100   4e-22
GSVIVT01003333001 assembled CDS                                       100   5e-22
GSVIVT01019325001 assembled CDS                                        67   3e-12
GSVIVT01037881001 assembled CDS                                        64   4e-11
GSVIVT01037716001 assembled CDS                                        58   2e-09
GSVIVT01036871001 assembled CDS                                        58   2e-09
GSVIVT01018827001 assembled CDS                                        46   8e-06

>GSVIVT01003552001 assembled CDS
          Length = 303

 Score =  139 bits (349), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 62/85 (72%), Positives = 74/85 (87%)

Query: 75  FTKLCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVN 134
           F KLCSLSP+LQ+FIG  ELARTEVVK+LW +IRE++LQDP N++NIICDE+L ALF V+
Sbjct: 133 FCKLCSLSPELQKFIGVPELARTEVVKQLWVHIREKDLQDPNNRRNIICDETLRALFGVD 192

Query: 135 SINMFQMNKALSKHIWPLNEEGMCP 159
           SINMFQMNKALSKHIWPL+ +   P
Sbjct: 193 SINMFQMNKALSKHIWPLDSDDAAP 217


>GSVIVT01031805001 assembled CDS
          Length = 122

 Score =  123 bits (309), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 56/87 (64%), Positives = 70/87 (80%), Gaps = 1/87 (1%)

Query: 75  FTKLCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVN 134
           + KLCSLSPQLQ+ +G +EL   +VVK+ W YI+E +LQDPKN +NIICDESL  LFHV+
Sbjct: 28  YNKLCSLSPQLQKIVGAAELTGPQVVKKFWTYIQENSLQDPKNNRNIICDESLQELFHVD 87

Query: 135 SINMFQMNKALSKHIWPLN-EEGMCPN 160
           SINMF+MNK LSKH+W LN E+G+  N
Sbjct: 88  SINMFEMNKVLSKHVWQLNVEDGISLN 114


>GSVIVT01037751001 assembled CDS
          Length = 331

 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 58/76 (76%)

Query: 77  KLCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVNSI 136
           K+C +SP+LQ  +G+  L RTE+VK+LWAYIR  NLQDP NK+ IIC++ L  +F  +S 
Sbjct: 149 KVCGVSPELQTIVGQPALPRTEIVKQLWAYIRRNNLQDPSNKRKIICNDELRLVFETDST 208

Query: 137 NMFQMNKALSKHIWPL 152
           +MF+MNK L+KHI PL
Sbjct: 209 DMFKMNKLLAKHIIPL 224



 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 81  LSPQLQEFIGES--ELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVNSINM 138
           +S  L  F G S  E+ ++EV++R+W YI+  +L+DP N   I+CD  L  +F   SI+ 
Sbjct: 256 ISEALANFFGTSGREMLQSEVLRRVWEYIKVNHLEDPLNSMVILCDAKLQEIFGCESISA 315

Query: 139 FQMNKALSKH 148
             + + L +H
Sbjct: 316 LGIPEILMRH 325


>GSVIVT01003340001 assembled CDS
          Length = 344

 Score =  100 bits (248), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 59/76 (77%)

Query: 77  KLCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVNSI 136
           K+C +S +LQ  +GE  + RT++VK+LWAYIR+ NLQDP NK+ IICD++L  +F  +S 
Sbjct: 162 KVCGVSTELQAVVGEPTMPRTQIVKQLWAYIRKNNLQDPSNKRKIICDDALRLVFETDST 221

Query: 137 NMFQMNKALSKHIWPL 152
           +MF+MNK L+KHI PL
Sbjct: 222 DMFKMNKLLAKHIIPL 237



 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 90  GESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVNSINMFQMNKALSKH 148
           GE E+ + E ++R+W YI+   L+DP N   I+CD  L  LF   SI+   +++ L++H
Sbjct: 280 GEREMLQEEALRRVWEYIKVNQLEDPLNSMAILCDAKLRELFGCESISALGVSEMLARH 338


>GSVIVT01003333001 assembled CDS
          Length = 347

 Score = 99.8 bits (247), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 59/76 (77%)

Query: 77  KLCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVNSI 136
           K+C +S +LQ  +GE  + RT++VK+LWAYIR+ NLQDP NK+ IICD++L  +F  +S 
Sbjct: 165 KVCGVSTELQAVVGEPTMPRTQIVKQLWAYIRKNNLQDPSNKRKIICDDALRLVFETDST 224

Query: 137 NMFQMNKALSKHIWPL 152
           +MF+MNK L+KHI PL
Sbjct: 225 DMFKMNKLLAKHIIPL 240



 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 90  GESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVNSINMFQMNKALSKH 148
           GE E+ + E ++R+W YI+   L+DP N   I+CD  L  LF   SI+   +++ L++H
Sbjct: 283 GEREMLQEEALRRVWEYIKVNQLEDPLNSMAILCDAKLQELFGCESISALGVSEMLARH 341


>GSVIVT01019325001 assembled CDS
          Length = 128

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 76  TKLCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHV-N 134
           TK   +SP L++F+G  E +R E VK++W +I+  NLQ+P NK+ I+CDE L ++F   +
Sbjct: 50  TKPVPVSPALRKFLGVPEASRAEAVKKIWEHIKLNNLQNPTNKREILCDEKLKSVFEGKD 109

Query: 135 SINMFQMNKALSKHI 149
            +   ++ K LS H 
Sbjct: 110 KVGFLEIGKLLSHHF 124


>GSVIVT01037881001 assembled CDS
          Length = 68

 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 39/47 (82%)

Query: 85  LQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALF 131
           +Q+F+G  E+ RT+ +K++WAYI++ NLQDP+NK+ I+CDE L ++F
Sbjct: 1   MQDFLGVPEIPRTQALKQIWAYIKQHNLQDPENKKIIVCDEKLKSIF 47


>GSVIVT01037716001 assembled CDS
          Length = 100

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 37/54 (68%)

Query: 78  LCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALF 131
           L +L   L+EF+G+S+++R     R+W+YI+  NLQDP NK  +ICD+ L ++ 
Sbjct: 23  LANLPSTLREFVGQSQISRLGCFMRVWSYIKANNLQDPNNKNVVICDDKLRSIL 76


>GSVIVT01036871001 assembled CDS
          Length = 115

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 2/76 (2%)

Query: 75  FTKLCSLSPQLQEFIGE-SELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHV 133
            TK   +SPQL +F+G   + +R+  +K++W +I+  NLQ+P NK+ I CDE L  +F  
Sbjct: 35  ITKPVPVSPQLGKFLGGVPQASRSLAIKKVWEHIKLHNLQNPTNKKEICCDEKLKTIFDG 94

Query: 134 -NSINMFQMNKALSKH 148
            + +   ++ K LS H
Sbjct: 95  KDKVGFLEIAKLLSPH 110


>GSVIVT01018827001 assembled CDS
          Length = 1362

 Score = 45.8 bits (107), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 82  SPQLQEFIGE------SELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVNS 135
           S +L E +G       S L++ +V   L  YI+  NL+DP+ K  IICD  L  LF    
Sbjct: 340 SKELLELVGHMKNGDTSVLSQFDVQALLLEYIKRNNLRDPRRKSQIICDMRLRNLFGKAR 399

Query: 136 INMFQMNKALSKH 148
           +  F+M K L  H
Sbjct: 400 VGHFEMLKLLESH 412