Jatropha Genome Database

JcCB0181311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0181311.10 + phase: 0 /partial
         (150 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01030482001 assembled CDS                                       109   6e-25
GSVIVT01012662001 assembled CDS                                        97   4e-21
GSVIVT01012665001 assembled CDS                                        77   2e-15
GSVIVT01025676001 assembled CDS                                        51   2e-07
GSVIVT01020456001 assembled CDS                                        49   6e-07
GSVIVT01032435001 assembled CDS                                        49   7e-07
GSVIVT01014221001 assembled CDS                                        49   9e-07
GSVIVT01014500001 assembled CDS                                        48   1e-06
GSVIVT01035841001 assembled CDS                                        48   2e-06
GSVIVT01006444001 assembled CDS                                        47   3e-06
GSVIVT01013621001 assembled CDS                                        47   3e-06
GSVIVT01017345001 assembled CDS                                        47   4e-06
GSVIVT01008327001 assembled CDS                                        47   4e-06
GSVIVT01007706001 assembled CDS                                        47   4e-06
GSVIVT01033037001 assembled CDS                                        46   5e-06
GSVIVT01037993001 assembled CDS                                        46   6e-06
GSVIVT01038011001 assembled CDS                                        46   6e-06
GSVIVT01035007001 assembled CDS                                        46   8e-06

>GSVIVT01030482001 assembled CDS
          Length = 625

 Score =  109 bits (272), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 57/67 (85%), Positives = 59/67 (88%), Gaps = 2/67 (2%)

Query: 86  PGSNSDKPVESTGLA--PSPGLTGITVDKSVEFSYEELAQATDNFNLANKIGQGGFGSVY 143
           PG  SDK VESTG A   S GLTGITVDKSVEFSYEELA+A+DNFNLANKIGQGGFGSVY
Sbjct: 283 PGIASDKAVESTGPAFGSSAGLTGITVDKSVEFSYEELAKASDNFNLANKIGQGGFGSVY 342

Query: 144 YAELRGE 150
           YAELRGE
Sbjct: 343 YAELRGE 349


>GSVIVT01012662001 assembled CDS
          Length = 650

 Score = 96.7 bits (239), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 56/68 (82%), Gaps = 2/68 (2%)

Query: 85  APGSNSDKPVESTGL--APSPGLTGITVDKSVEFSYEELAQATDNFNLANKIGQGGFGSV 142
           A GS S++  +S  L  A S GL GITVDKSVEFSYEELA ATDNF+LANKIGQGGFGSV
Sbjct: 306 AHGSASEETSDSAALVGAASLGLVGITVDKSVEFSYEELATATDNFSLANKIGQGGFGSV 365

Query: 143 YYAELRGE 150
           YYAELRGE
Sbjct: 366 YYAELRGE 373


>GSVIVT01012665001 assembled CDS
          Length = 365

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 50/66 (75%), Gaps = 2/66 (3%)

Query: 87  GSNSDKPVESTGL--APSPGLTGITVDKSVEFSYEELAQATDNFNLANKIGQGGFGSVYY 144
           GS  +K  +S  L  A S  L GIT DKSVEF+YEELA+AT+NF+ A+KIGQGGF  VYY
Sbjct: 23  GSTLEKTSDSVALVAAVSLELVGITADKSVEFTYEELAKATNNFSAASKIGQGGFALVYY 82

Query: 145 AELRGE 150
           AEL+G+
Sbjct: 83  AELQGQ 88


>GSVIVT01025676001 assembled CDS
          Length = 433

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 107 GITVDKSVEFSYEELAQATDNFNLANKIGQGGFGSVYYAELR 148
           G T +K   FSY+EL  ATD+F+ +NKIG+GGFGSVY  +LR
Sbjct: 65  GNTSEKFQVFSYKELKIATDSFHPSNKIGEGGFGSVYKGQLR 106


>GSVIVT01020456001 assembled CDS
          Length = 385

 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 10/70 (14%)

Query: 79  FGSLDSAPGSNSDKPVESTGLAPSPGLTGITVDKSVEFSYEELAQATDNFNLANKIGQGG 138
           FG   S+P   +DK  E        G+  + +     + Y+EL  ATD+F+ ANKIG+GG
Sbjct: 7   FGRRASSPAGETDKVDEEVS-----GIHNVRL-----YMYKELKNATDDFSPANKIGEGG 56

Query: 139 FGSVYYAELR 148
           FGSVY   L+
Sbjct: 57  FGSVYKGRLK 66


>GSVIVT01032435001 assembled CDS
          Length = 1245

 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 28/40 (70%)

Query: 109 TVDKSVEFSYEELAQATDNFNLANKIGQGGFGSVYYAELR 148
            V +S++F Y  L +ATD FN ANK+GQGGFG V+   LR
Sbjct: 337 VVKRSLQFKYTTLEKATDYFNEANKLGQGGFGEVFKGTLR 376


>GSVIVT01014221001 assembled CDS
          Length = 385

 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 26/34 (76%)

Query: 115 EFSYEELAQATDNFNLANKIGQGGFGSVYYAELR 148
            +SY EL  AT +F+LANKIG+GGFGSVY   LR
Sbjct: 34  RYSYRELRIATQDFSLANKIGEGGFGSVYKGTLR 67


>GSVIVT01014500001 assembled CDS
          Length = 1901

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 27/34 (79%)

Query: 116  FSYEELAQATDNFNLANKIGQGGFGSVYYAELRG 149
            F ++ +A+ATDNF+ +NK+GQGGFG VY   LRG
Sbjct: 1571 FDFDTIAEATDNFSRSNKLGQGGFGPVYKGMLRG 1604


>GSVIVT01035841001 assembled CDS
          Length = 262

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 31/44 (70%)

Query: 106 TGITVDKSVEFSYEELAQATDNFNLANKIGQGGFGSVYYAELRG 149
           +   +DK+  FSY E+  AT NF+++ KIGQG +GSVY  +LRG
Sbjct: 3   SSFNLDKATVFSYIEVCDATCNFSMSLKIGQGSYGSVYLGKLRG 46


>GSVIVT01006444001 assembled CDS
          Length = 441

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 34/47 (72%)

Query: 102 SPGLTGITVDKSVEFSYEELAQATDNFNLANKIGQGGFGSVYYAELR 148
           S  + G  ++K+ + S+ EL +ATDNF+ ++KIG+GGFG+VY   L+
Sbjct: 98  SQKIDGNLLEKTKQISFNELKKATDNFHPSSKIGRGGFGTVYKGTLK 144


>GSVIVT01013621001 assembled CDS
          Length = 911

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 10/61 (16%)

Query: 87  GSNSDKPVESTGLAPSPGLTGITVDKSVEFSYEELAQATDNFNLANKIGQGGFGSVYYAE 146
           GS+ ++ +E   + P P            FSY EL  AT+NFN  NK+G+GGFG+VY   
Sbjct: 552 GSDMNEDIELPEIGPRPS----------TFSYAELRTATENFNAINKLGEGGFGAVYKGT 601

Query: 147 L 147
           L
Sbjct: 602 L 602


>GSVIVT01017345001 assembled CDS
          Length = 172

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 26/32 (81%)

Query: 116 FSYEELAQATDNFNLANKIGQGGFGSVYYAEL 147
           FS +EL  AT+NFN  NK+G+GGFGSVY+ +L
Sbjct: 28  FSLKELHAATNNFNYDNKLGEGGFGSVYWGQL 59


>GSVIVT01008327001 assembled CDS
          Length = 973

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query: 90  SDKPVESTGLAPSPGLTGITVDKSVEFSYEELAQATDNFNLANKIGQGGFGSVYYAELR 148
           S  P   T       L G+ +     F+YEEL +AT+NF+ + ++G GGFG+VY+ +LR
Sbjct: 615 SSDPSSKTIFESQGSLHGVHI-----FTYEELEEATNNFDSSKELGDGGFGTVYHGKLR 668


>GSVIVT01007706001 assembled CDS
          Length = 636

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/40 (50%), Positives = 28/40 (70%)

Query: 104 GLTGITVDKSVEFSYEELAQATDNFNLANKIGQGGFGSVY 143
           GL+       + F Y+EL QAT+NF+ +NK+GQG +GSVY
Sbjct: 289 GLSSALAHSQLNFRYQELRQATNNFDSSNKLGQGSYGSVY 328


>GSVIVT01033037001 assembled CDS
          Length = 422

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 86  PGSNSDKPVESTGLAP--SPGLTGITVDKSVEFSYEELAQATDNFNLANKIGQGGFGSVY 143
           P   S  P   +G  P  S    G+  +K+  F++ ELA AT+NF   + IG+GGFG+VY
Sbjct: 26  PSRTSTDPELPSGSKPEASVATDGVAGNKTRTFTFRELATATNNFRQESLIGEGGFGTVY 85

Query: 144 YAELRG 149
             ++ G
Sbjct: 86  KGKIEG 91


>GSVIVT01037993001 assembled CDS
          Length = 2282

 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 10/64 (15%)

Query: 87  GSNSDKPVESTGLAPSPGLTGITVDKSVEFSYEELAQATDNFNLANKIGQGGFGSVYYAE 146
            SN ++  E  G+ P P            F+Y EL  AT++FN  NK+G+GGFG VY  +
Sbjct: 670 ASNINEDEELLGIGPRPN----------TFTYAELRTATEDFNPTNKLGEGGFGPVYKGK 719

Query: 147 LRGE 150
           L  E
Sbjct: 720 LNDE 723



 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 10/61 (16%)

Query: 87   GSNSDKPVESTGLAPSPGLTGITVDKSVEFSYEELAQATDNFNLANKIGQGGFGSVYYAE 146
             SN +K +   G+ P P            F Y EL  AT+NF+  NK+G+GGFGSVY   
Sbjct: 1933 ASNLNKDIVLLGVGPRPN----------TFRYAELRTATENFSATNKLGEGGFGSVYKGT 1982

Query: 147  L 147
            L
Sbjct: 1983 L 1983


>GSVIVT01038011001 assembled CDS
          Length = 1003

 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 10/61 (16%)

Query: 87  GSNSDKPVESTGLAPSPGLTGITVDKSVEFSYEELAQATDNFNLANKIGQGGFGSVYYAE 146
           GSNS++ +E   + P           S  FSY EL  AT+NFN  NK+G+GGFG+V+   
Sbjct: 639 GSNSNEEIELLEIGPI----------SNTFSYAELRTATENFNPTNKLGEGGFGAVFKGT 688

Query: 147 L 147
           L
Sbjct: 689 L 689


>GSVIVT01035007001 assembled CDS
          Length = 701

 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 27/37 (72%)

Query: 111 DKSVEFSYEELAQATDNFNLANKIGQGGFGSVYYAEL 147
           +  + F Y++L +AT +F+L NKIGQGG+GSVY   L
Sbjct: 358 ESHLSFKYDDLRKATKDFDLGNKIGQGGYGSVYKGTL 394