Jatropha Genome Database

JcCB0180631.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0180631.20 - phase: 0 /pseudo
         (278 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013538001 assembled CDS                                        58   4e-09
GSVIVT01031694001 assembled CDS                                        57   7e-09
GSVIVT01010911001 assembled CDS                                        50   8e-07
GSVIVT01026026001 assembled CDS                                        50   9e-07
GSVIVT01026027001 assembled CDS                                        49   3e-06

>GSVIVT01013538001 assembled CDS
          Length = 711

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 92/223 (41%), Gaps = 57/223 (25%)

Query: 5   VPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPRSQGDLPKYVCGSYF-F 63
           +PE I+  I S+LP KSLLRF+C+ K+  +LIS P F+ +H+ R Q   P  V G     
Sbjct: 4   IPEVIMVDILSRLPVKSLLRFRCVCKAWCTLISHPQFVETHL-RQQHKRP--VIGLVVPH 60

Query: 64  DVNTAVEAKPVKSPLKQQMPFLNQTNHKILCSCDGVILLRARINTPTLYSKDNEANALRM 123
            V+  +    +   L+  +   N+    +L SC+G++ +                     
Sbjct: 61  SVDDPLHKDDLAVDLELHLGIPNKRTTTVLDSCNGLLCV--------------------- 99

Query: 124 CXXXXXXXXXXXXXXXXXXXYYS------IIVWNPLIREYRIFPMPESGDYVS--YGLGY 175
                               +YS      +I+WNP  R+    P P    Y +  Y   Y
Sbjct: 100 --------------VDCYYGFYSLKPPQKLILWNPSTRQCNHIPCPSFVGYQNCMYSFFY 145

Query: 176 DSVTDDYKVVQ----CGISKNHLIKXNALIVLSLKSNSMRKHE 214
           D  +DDYK+V+     G  K        + + +LK+N  R+ E
Sbjct: 146 DPGSDDYKIVRIFTFLGKDK------TGIDIFTLKTNKWRRVE 182


>GSVIVT01031694001 assembled CDS
          Length = 184

 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 82/200 (41%), Gaps = 58/200 (29%)

Query: 4   RVPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSH--VPRSQ----------- 50
            +P  I+  I  +LP KSL+RF+C+ K+  +LIS P+F+RSH  +P++Q           
Sbjct: 3   ELPLHIIENILLRLPVKSLIRFRCVCKAWRTLISHPHFVRSHFRLPQTQARTRLCIIDYS 62

Query: 51  --GDLPKYVCGSYFFDVNTAVEAKPVKSPLKQQMPFLNQTNHKI--LCSCDGVILLRARI 106
             GD    V  +   D   A       S     +  + +  H++  L SCDG++ +    
Sbjct: 63  ERGDNHSMVVRASTKDCE-AFSDNDGGSLAFDYLFDIGKFKHEVVLLDSCDGLLCIADLA 121

Query: 107 NTPTLYSKDNEANALRMCXXXXXXXXXXXXXXXXXXXYYSIIVWNPLIREY-RIFPMPES 165
           N   L                                      WNP  R++ ++ P P  
Sbjct: 122 NKIVL--------------------------------------WNPSTRQFNQLPPNPNV 143

Query: 166 GDYVS-YGLGYDSVTDDYKV 184
            D+V  +G GYDS  DDYK+
Sbjct: 144 VDFVGCHGFGYDSSADDYKI 163


>GSVIVT01010911001 assembled CDS
          Length = 415

 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 2/95 (2%)

Query: 8   EIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPRSQGDLPKYVCG--SYFFDV 65
           +++ +IF + P K LLRF+ +SK   SLIS P+F   H  RS   +P  + G  +  FD 
Sbjct: 37  DLLTEIFLRTPVKPLLRFRSVSKRWLSLISDPHFCHRHARRSSASVPGVLLGLPNSNFDF 96

Query: 66  NTAVEAKPVKSPLKQQMPFLNQTNHKILCSCDGVI 100
            +  E K  + PL+      +    K+L  C+G++
Sbjct: 97  ISFDEKKASEPPLRSLDFIGDPLGVKVLQVCNGLL 131


>GSVIVT01026026001 assembled CDS
          Length = 243

 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 9/73 (12%)

Query: 146 SIIVWNPLIREYRIFP---MPESGDYVSYGLGYDSVTDDYKVVQ---CGISKNHLIKXNA 199
           +I VWNP I+E +  P     +    VSY  GYDS+TDDYKVV+   C I+ ++      
Sbjct: 5   TIFVWNPSIKESKRLPSKPFEQLFYLVSYAFGYDSITDDYKVVRLVCCSINDSYEYH--- 61

Query: 200 LIVLSLKSNSMRK 212
           + V SL+SN+ RK
Sbjct: 62  VEVFSLRSNAWRK 74


>GSVIVT01026027001 assembled CDS
          Length = 372

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 147 IIVWNPLIREYRIFP---MPESGDYVSYGLGYDSVTDDYKVVQCGISKNHLIKXNALIVL 203
           I VWNP  RE+R  P     +    V+YG GYDS+ DDYKV + G           + V 
Sbjct: 118 IFVWNPSTREFRRLPPISFMQCFHLVAYGFGYDSIADDYKVTRVGCYCIGRYYEYQVRVF 177

Query: 204 SLKSNSMRKHE 214
           SL+ N  RK E
Sbjct: 178 SLRGNVWRKIE 188



 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query: 4  RVPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPRSQGD 52
           +P+EI+ +I   LP KSL+RFKC+SKS   +IS P+F +  +  +  D
Sbjct: 25 HIPDEIILEILCLLPVKSLMRFKCVSKSWREMISDPDFEKKQLAVAARD 73