Jatropha Genome Database

JcCB0180631.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0180631.10 - phase: 1 /TE
         (667 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01010555001 assembled CDS                                        72   8e-13

>GSVIVT01010555001 assembled CDS
          Length = 147

 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 42/67 (62%)

Query: 518 MDGKTTFLNGDLEEEIYMELPEDFVEKEDCVCKLKKSLYGLKQALRQWYKKFESVMGEQG 577
           MD K  FLNGDL EE+YM+ P     + + VC L+++LYGLKQA R W+ KF S +   G
Sbjct: 1   MDVKNAFLNGDLSEEVYMQPPPGLSVESNKVCHLRRALYGLKQAPRAWFAKFSSTIFRLG 60

Query: 578 YRKTTSD 584
           Y  +  D
Sbjct: 61  YTASPYD 67