Jatropha Genome Database

JcCB0176661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0176661.10 + phase: 0 /partial
         (204 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032996001 assembled CDS                                       373   e-104
GSVIVT01004941001 assembled CDS                                       360   e-100
GSVIVT01036290001 assembled CDS                                        74   4e-14

>GSVIVT01032996001 assembled CDS
          Length = 479

 Score =  373 bits (957), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/204 (90%), Positives = 195/204 (95%), Gaps = 1/204 (0%)

Query: 1   VLHPQSMRPAREGDIPVRVKNSYNPNAPGTLITRARDMRKAVLTSIVLKRNVTMLDIVST 60
           VLHPQSMRPAREGDIPVRVKNSYN NAPGTLITR RDM KAVLTSIVLKRNVTMLDIVST
Sbjct: 260 VLHPQSMRPAREGDIPVRVKNSYNRNAPGTLITRTRDMSKAVLTSIVLKRNVTMLDIVST 319

Query: 61  RMLGQFGFLAKVFSIFEDLGISVDVVATSEVSISLTLDPSKVWSRELIQQASELDHVVEE 120
           RMLGQFGFLAKVFSIFE+LGISVDVVATSEVSISLTLDPSK+WSRELIQQASELDHVVEE
Sbjct: 320 RMLGQFGFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQQASELDHVVEE 379

Query: 121 LEKIAVVNLLQHRSIISLIGNVQRSSLILEKVFNVLRTNGVNVQMISQGASKVNISLIVN 180
           LEKIAVVNLLQHRSIISLIGN+Q SSLILEK F+VLRT GVNVQMISQGASKVNISLIVN
Sbjct: 380 LEKIAVVNLLQHRSIISLIGNIQMSSLILEKAFHVLRTKGVNVQMISQGASKVNISLIVN 439

Query: 181 DDEAEQCVRSLHKTFFETDISELD 204
           DD+AE+CVR+LH  FFE+ +SE+D
Sbjct: 440 DDQAEKCVRALHSAFFES-LSEVD 462


>GSVIVT01004941001 assembled CDS
          Length = 482

 Score =  360 bits (925), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/204 (89%), Positives = 189/204 (92%), Gaps = 3/204 (1%)

Query: 1   VLHPQSMRPAREGDIPVRVKNSYNPNAPGTLITRARDMRKAVLTSIVLKRNVTMLDIVST 60
           VLHPQ+MRPARE DIPVRVKNSYNP APGTLI + RDM KAVLTSIVLKRNVTMLDIVST
Sbjct: 260 VLHPQAMRPARESDIPVRVKNSYNPEAPGTLINKTRDMSKAVLTSIVLKRNVTMLDIVST 319

Query: 61  RMLGQFGFLAKVFSIFEDLGISVDVVATSEVSISLTLDPSKVWSRELIQQASELDHVVEE 120
           RMLGQFGFLAKVFSIFEDLGISVDVVATSEVSISLTLDPSK+WSRELIQQ  ELDHVVEE
Sbjct: 320 RMLGQFGFLAKVFSIFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQ--ELDHVVEE 377

Query: 121 LEKIAVVNLLQHRSIISLIGNVQRSSLILEKVFNVLRTNGVNVQMISQGASKVNISLIVN 180
           LEKIAVVNLLQHRSIISLIGN+QRSSLILEK FNVLRT GVNVQMISQGASKVNISLIVN
Sbjct: 378 LEKIAVVNLLQHRSIISLIGNIQRSSLILEKAFNVLRTIGVNVQMISQGASKVNISLIVN 437

Query: 181 DDEAEQCVRSLHKTFFE-TDISEL 203
           D EAEQCV++LH  FFE  D+ EL
Sbjct: 438 DSEAEQCVKALHHAFFEIGDLFEL 461


>GSVIVT01036290001 assembled CDS
          Length = 871

 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 112/216 (51%), Gaps = 32/216 (14%)

Query: 1   VLHPQSMRPAREGDIPVRVKNSYNPNAPGTLITR-------ARDMRKAVLTSIVLKRNVT 53
           VLHP+++ P  +  IP+ ++N +N +APGT+I R            ++ +       NV 
Sbjct: 304 VLHPRTIIPVMQYGIPIVIRNIFNLSAPGTMICRPSVDENEGNQRLESPVKGFATIDNVA 363

Query: 54  MLDIVSTRMLGQFGFLAKVFSIFEDLGISVDVV--ATSEVSISLTLDPSKVWSRELIQQA 111
           ++++  T M G  G  + +FS  +D+G +V ++  A+SE S+   + P K          
Sbjct: 364 LINVEGTGMAGVPGTASAIFSAVKDVGANVIMISQASSEHSVCFAV-PEK---------- 412

Query: 112 SELDHVVEELE----------KIAVVNLLQHRSIISLIGNVQRSSL-ILEKVFNVLRTNG 160
            E++ V E L+          +++ V ++ + SI++ +G    S+  +   +F+ L    
Sbjct: 413 -EVEAVAEALQSRFRQALDAGRLSQVAVVPNCSILATVGQRMASTPGVSASLFSALAKAN 471

Query: 161 VNVQMISQGASKVNISLIVNDDEAEQCVRSLHKTFF 196
           +N++ I+QG S+ NI+++V  ++  + ++++H  F+
Sbjct: 472 INIRAIAQGCSEYNITVVVKREDCIRALKAVHSRFY 507